Batch case upload via CLI

Prerequisites

• Emedgene platform version >= 32

• Download and install node js platform via https://nodejs.org/en/download Minimum version required: 16 Upgrade existing installation: nvm install --lts

Batch upload via CLI (Command Line Interface)

1. Download the batch case create script. Replace my-domain with your Emedgene domain. Illumina cloud: my-domain.emg.illumina.com Legacy Emedgene cloud: my-domain.emedgene.com

curl https://my-domain.emg.illumina.com/v2/js/batchCasesCreator.js --output batchCasesCreator.js

1. Download the CSV template file.

node batchCasesCreator.js saveTemplateFile

1. Edit the downloaded batchCases.csv file. See CSV format requirements for more details.

2. Execute the batch cases creator as java script using the command below. Replace my-domain with your Emedgene domain and my-email with your user email. A prompt for your Emedgene password will appear, enter the password and press Enter.

node batchCasesCreator.js create -h https://my-domain.emg.illumina.com -c batchCases.csv -u my-email -l

1. In case of validation errors in the input CSV, an output CSV called batchCases_results.csv will be created in the same location with detailed error results.

2. -l will create a log file in the same location.

More information can be found by running

node batchCasesCreator.js --help

node batchCasesCreator.js create --help