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Genome assemblies supported by Curate

Curate supports both GRCh37/hg19 and GRCh38/hg38 genome assemblies. Each time the variant is added to the knowledge base, its genomic coordinates can be converted on-the-fly from one assembly to another. To change the genome assembly, click on the Human reference icon and select the genome assembly you wish to use.

Curate overview

Curate is a knowledge management solution—a searchable, private database of variants curated by your team.

If you encounter a variant that is already in your Curate database, it will be highlighted in the Variant table and on the Variant page.

Curate:

  • saves you time and effort to filter, prioritize and interpret variants

  • allows for variant interpretation consistency

  • simplifies variant reanalysis

Note: To gain access to the Curate application, you will need the appropriate . Additional roles are also required if you want permissions to export variants, create variants or update any information stored in Curate.

Curate navigation panel

The Curate navigation panel is a vertical left-side panel that serves as a guide to the curated database.

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It features (from top to bottom):

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Emedgene Applications menu

The Emedgene platform is divided into two applications:

  • Analyze—the genomic analysis workbench

  • Curate—the knowledge management system

user roles
1. Home button

Clicking this deselects the variant you're looking at and brings you to the top of the variant table

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2. Human reference icon

Displays the currently selected . Upon clicking, you can change between GRCh37/hg19 and GRCh38/hg38 coordinates

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3. Add new variant/gene button

Launches the Add new data flow

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4. Variants button

Leads to the

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5. Genes button

Leads to the

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6. Articles button

🚧 under development

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7. Connection button

🚧 under development

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8. Emedgene applications button

Opens the menu to allow you to back to Analyze from Curate

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9. User initials or profile picture

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To switch from Analyze to Curate:

Go to the nine-dot app launcher icon located on the left of the and select Curate from the dropdown menu.

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To switch from Curate to Analyze:

Go to the nine-dot app launcher icon located on the Curate navigation panel and select Analyze from the dropdown menu.

reference genome
Curate Variant table
Curate Gene table
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Top navigation panel

Curate