> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/icm/analyses/analysis-functionality/settings/library-file-management.md).

# Library File Management

The library file management tool in Connected Multiomics provides an easy way to create, process and manage reference sequences, cytoband files, annotation models, gene sets, variant databases and many others.

The process can be adapted to the different kinds of file types.

This user guide will cover the following topics:

* [Library File Management Page](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/9npv9u7RcPWHiXftGkmn)
* [Selecting an Assembly](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/K4nbCPau3o8mkQEERSsl)
* [Library Files](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/NRk2kEhq1aYshKELKRuS)
* [Update Library Index](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/lD7YyMUjafA3ZErDBIUL)
* [Creating an Assembly on the Library File Management Page](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/a4EivHeJcUAaE3Ol90za)
* [Adding Library Files on the Library File Management Page](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/4SjUfCXvMrQCvorHGM5A)
* [Adding a Reference Sequence](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/oMccEwc3bxm5uB5lzmlx)
* [Adding a Cytoband](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/DuAqoohx1VeVTNp0D0zn)
* [Adding a Gene Set](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/RXiSglo5z3V9S6u8mXc8)
* [Adding a Variant Annotation Database](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/yyPubaEoeTUz7pMeeBRg)
* [Adding a SnpEff Variant Database](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/1ewiDkqZT8m2VCBxikhA)
* [Adding a Variant Effect Predictor (VEP) Database](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/9QH0S5z1GEuMHrnScNXD)
* [Adding an Annotation Model](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/SaeZ3a6AxxXvble78i8A)
* [Adding Library Files from Within a Project](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/zB1dogquHaTMcorBK5tC)
* [Microarray Library Files](broken://spaces/5WPPw051cYE3Zthy5U7m/pages/GczgUFT9tToXlMXBeUAN)
* [Removing Library Files](/icm/analyses/analysis-functionality/settings/library-file-management/removing-library-files.md)


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