# Task Menu

The Task Menu lists all the tasks that can be performed on a specific node. It can be invoked from either a **Data** or **Task node** and appears on the right hand side of the *Analyses* tab. It is *context-sensitive*, meaning that it will only present tasks that the user can perform on the selected node. For example, selecting an *Differential analysis* report data node will not present normalization as options.

Clicking a **Data node** presents a variety of tasks:

* [AI analysis suggestions](https://app.gitbook.com/o/-MWUoaZPOpY9hR_8vqOU/s/5WPPw051cYE3Zthy5U7m/~/edit/~/changes/101/analyses/analysis-functionality/ai-analysis-suggestions)
* [Task actions](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/task-actions)
* [Data summary report](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/data-summary-report)
* [QA/QC](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/qa-qc)
  * [Feature distribution](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/qa-qc/feature-distribution)
  * [Imported count matrix report](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/qa-qc/feature-distribution-1)
  * [Single-cell QA/QC](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/qa-qc/single-cell-qa-qc)
  * [Cell barcode QA/QC](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/qa-qc/cell-barcode-qa-qc)
  * [5-base Methylation QC](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/qa-qc/5-base-methylation-qc)
* [Annotation/Metadata](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/annotation-metadata)
  * [Annotate cells](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/annotation-metadata/annotate-cells)
  * [Annotate features](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/annotation-metadata/annotate-cells-1)
  * [Publish cell attributes to project](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/annotation-metadata/publish-cell-attributes-to-project)
  * [Attribute report](https://help.connected.illumina.com/icm/analyses/analysis-functionality/broken-reference)
* [Pre-analysis tools](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/pre-analysis-tools)
  * [Pseudobulk](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/pre-analysis-tools/pool-cells)
  * [Split by feature type](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/pre-analysis-tools/split-matrix)
  * [Generate group cell counts](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/pre-analysis-tools/generate-group-cell-counts)
  * [Merge matrices](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/pre-analysis-tools/merge-matrices)
  * [Generate beta value](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/pre-analysis-tools/generate-beta-value)
  * [Generate methylation mvalues](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/pre-analysis-tools/generate-methylation-mvalues)
* [Filtering](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/filtering)
  * [Filter features](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/filtering/filter-features)
  * [Filter samples/cells](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/filtering/filter-groups-samples-or-cells)
  * [Split by attribute](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/filtering/split-by-attribute)
  * [Downsample cells](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/filtering/downsample-cells)
* [Normalization and scaling](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/normalization-and-scaling)
  * [Normalization](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/normalization-and-scaling/normalization)
  * [Normalize to housekeeping genes](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/normalization-and-scaling/normalize-to-housekeeping-genes)
  * [Normalize to baseline](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/normalization-and-scaling/normalize-to-baseline)
  * [Scran deconvolution](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/normalization-and-scaling/scran-deconvolution)
  * [TF-IDF normalization](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/normalization-and-scaling/tf-idf-normalization)
  * [Impute missing values](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/normalization-and-scaling/impute-missing-values)
  * [Impute missing values](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/normalization-and-scaling/impute-missing-values)
  * [Impute low expression](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/normalization-and-scaling/impute-low-expression)
  * [SCTransform](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/normalization-and-scaling/sctransform)
* [Batch removal](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/batch-removal)
  * [General linear model](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/batch-removal/general-linear-model)
  * [Harmony](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/batch-removal/harmony)
  * [Seurat3 integration](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/batch-removal/seurat3-integration)
* [Statistics](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics)
  * [Differential Analysis](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/differential-analysis)
    * [DESeq2](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/differential-analysis/deseq2-r-vs-deseq2)
    * [Hurdle model](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/differential-analysis/hurdle-model)
    * [ANOVA/LIMMA-trend/LIMMA-voom](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/differential-analysis/anova-limma-trend-limma-voom)
    * [Welch's ANOVA](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/differential-analysis/kruskal-wallis)
    * [Kruskal-Wallis / Wilcoxon](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/differential-analysis/kruskal-wallis-1)
    * [Poisson/Negative binomial/GSA (Gene Specific Analysis)](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/differential-analysis/gsa)
    * [Troubleshooting](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/differential-analysis/troubleshooting)
  * [Descriptive statistics](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/correlation-analysis-1)
  * [Correlation](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/correlation-analysis-1)
  * [Differential methylation](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/correlation-analysis-2)
  * [Detect differential methylation](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/detect-differential-methylation)
  * [Compute biomarkers](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/compute-biomarkers)
  * [Survival Analysis with Cox regression and Kaplan-Meier analysis](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/survival-analysis-with-cox-regression-and-kaplan-meier-analysis)
  * [Classification](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/survival-analysis-with-cox-regression-and-kaplan-meier-analysis-1)
  * [Spatially Variable Genes](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/statistics/spatially-variable-genes)
* [Exploratory analysis](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis)
  * [Graph-based clustering](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/graph-based-clustering)
  * [K-means clustering](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/k-means-clustering)
  * [Compare clusters](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/compare-clusters)
  * [PCA](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/pca)
  * [t-SNE](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/t-sne)
  * [UMAP](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/umap)
  * [Hierarchical clustering / heatmap](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/hierarchical-clustering)
  * [AUCell](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/aucell)
  * [Find multimodal neighbors](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/find-multimodal-neighbors)
  * [SVD](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/svd)
  * [CellPhoneDB](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/cellphonedb)
  * [BANKSY - Spatial Domain Identification](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/banksy-spatial-domain-identification)
  * [Merge differential expression results](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/exploratory-analysis/merge-differential-expression-results)
* [Region analysis](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/region-analysis)
  * [Get Regional Methylation](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/region-analysis/get-regional-methylation)
  * [Annotate Regions](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/region-analysis/annotate-regions)
* [Trajectory analysis](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/trajectory-analysis)
  * [Trajectory Analysis (Monocle 2)](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/trajectory-analysis/trajectory-analysis-monocle-2)
  * [Trajectory Analysis (Monocle 3)](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/trajectory-analysis/trajectory-analysis-monocle-3)
* [Variant Analysis](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/variant-analysis)
  * [Annotate Variants](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/variant-analysis/annotate-variants)
  * [Annotate Variants (SnpEff)](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/variant-analysis/annotate-variants-snpeff)
  * [Annotate Variants (VEP)](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/variant-analysis/annotate-variants-vep)
  * [Filter Variants](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/variant-analysis/filter-variants)
  * [Summarize Cohort Mutations](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/variant-analysis/summarize-cohort-mutations)
  * [Combine Variants](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/variant-analysis/combine-variants)
  * [Remove Background Mutations](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/variant-analysis/remove-background-mutations)
* [Combine multiomics data](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/combine-multiomics-data)
  * [Combine 5-base methylation and variant data](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/combine-multiomics-data/combine-5-base-methylation-and-variant-data)
* [Motif Detection](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/motif-detection)
* [Biological interpretation](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/biological-interpretation)
  * [Gene Set Enrichment](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/biological-interpretation/gene-set-enrichment)
  * [GSEA](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/biological-interpretation/gsea)
  * [Gene set ANOVA](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/biological-interpretation/gsea-1)
  * [Correlation Engine Pathway](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/biological-interpretation/correlation-engine-pathway)
  * [Get targeted mRNA](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/biological-interpretation/get-targeted-mrna)
* [Classification](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/classification)
  * [Classify cell type](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/classification/classify-cell-type)
  * [Train classifier](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/classification/train-classifier)
  * [ScType](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/classification/sctype)
* [Conversion](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/conversion)
* [Region analysis](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/region-analysis)
  * [Annotate regions](https://help.connected.illumina.com/icm/analyses/analysis-functionality/task-menu/region-analysis/annotate-regions)
