Public Data Sets

ICA Cohorts comes front-loaded with a variety of publicly accessible data sets, covering multiple disease areas and also including healthy individuals.

Data setSamplesDiseases/PhenotypesReference

1kGP-DRAGEN

3202 WGS: 2504 original samples plus 698 relateds

Presumed healthy

DDD

4293 (3664 affected), de novos only

Developmental disorders

EPI4K

356, de novos only

Epilepsy

ASD Cohorts

6786 (4266 affected), de novos only

Autism Spectrum disorder

De Ligt et al.

100, de novos only

Intellectual disability

Homsy et al.

1213, de novos only

Congenital heart disease (HP:0030680)

Lelieveld et al.

820, de novos only

Intellectual disability

Rauch et al.

51, de novos only

Intellectual disability

Rare Genomes Project

315 WES (112 pedigrees)

Various

https://raregenomes.org/

TCGA

ca. 4200 WES, ca. 4000 RNAseq

12 tumor types

https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga

GEO

RNAseq

Auto-immune disorders, incl. asthma, arthritis, SLE, MS, Crohn's disease, Psoriasis, SjΓΆgren's Syndrome

For GEO/GSE study identifiers, please refer to the in-product list of studies

RNAseq

Kidney diseases

For GEO/GSE study identifiers, please refer to the in-product list of studies

RNAseq

Central nervous system diseases

For GEO/GSE study identifiers, please refer to the in-product list of studies

RNAseq

Parkinson's disease

For GEO/GSE study identifiers, please refer to the in-product list of studies

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