Data Upload from ICA or BSSH (Connected Insights - Cloud)
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Connected Insights - Cloud supports data uploads from Connected Analytics (ICA) and BaseSpace Sequence Hub (BSSH) for defined workflows.
You must be a member of the workgroup to which the data is uploaded. A project not linked to the workgroup must be given permissions at the level of Contributor in the Team tab of ICA to be accessible from Connected Insights. User must have "Lab Director" role for Connected Insights to run the ici-uploader. For more information on adding users to a workgroup and adding permissions, refer to .
You must be a member of the workgroup to which the data is uploaded in both Connected Insights and BSSH. The user must have permission at the level of Has Access in BSSH to be accessible from Connected Insights.
This section provides instructions for adding a supported ICA pipeline.
In Connected Insights, select the gear in the top-right corner to open the Configuration page.
Select the General tab.
Select Data Upload.
Select the From Illumina Connected Analytics tab.
For Cloud Pipelines, select Add.
For Choose compatible pipeline from the catalog, select the applicable pipeline from the drop-down list, refer to .
For Test Definition, select the applicable definition.
Select Save.
ℹ️ For the configured Illumina Connected Analytics Pipeline, Connected Insights will automatically upload new analyses in ICA for the specified workflow. When data is uploaded, the status to the right of the workflow name will show the last analysis upload date. If a new project is created or linked after the configuration is made, it will need to be refreshed by editing and saving the configuration before it will begin to pick-up data from that project.
Locate the pipeline, and then select ...
Select Delete.
When prompted, select Yes, Remove.
This section provides instructions for manually uploading a completed analysis for a supported ICA pipeline.
From the Case List, select + New Case.
Select the Import from Connected Analytics option and click the button for Import from Connected Analytics.
Ensure the correct project is selected under Select Project.
Select the desired analysis to upload and click the button to Continue.
Click Review.
Review the information and click Submit to begin processing the selected analysis.
❗ The user must first configure the pipeline in Data Upload Configuration, see above, before manually uploading analyses from ICA.
This section provides instructions for manually uploading a completed analysis for a supported BSSH pipeline.
From the Case List, select + New Case.
Select the Import from BaseSpace Sequence Hub option and click the button for Import from BaseSpace Sequence Hub.
Select the desired analysis to upload and click the button to Continue.
Select the desired test definition to apply to the selected analysis.
[Optional] Select a case metadata file to upload (up to five files may be uploaded at one time), refer to Custom Case Data Upload
Click Review.
Review the information and click Submit to begin processing the selected analysis.
To use analysis data from one project (Project A) in another project (Project B), follow these steps:
Ensure that the workgroup has access to Project A.
Note down the folder ID or folder path of the data you want to access in Project B.
In Project B, click on "Data" in the side navigation.
Click on the "Link" menu.
Search by the folder ID or folder path, and click on "Link".
This process will take a few minutes. Once the job is complete, you will be able to access the data from Project A in Project B.
[Optional] Select a case metadata file to upload (up to five files may be uploaded at one time), refer to
Use an API to upload data to Connected Insights - Cloud. For more information, refer to .