> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/illumina-trupath-genome/data-visualizations-and-analysis/visualize-data-in-dragen-reports.md).

# Visualize Data in DRAGEN Reports

When enabled, Multi-Region Joint Detection (MRJD) calling results are also integrated into DRAGEN Reports, specifically, the MRJD results for sample-level reports will be available under the "Paralogs" tab. The "Paralog Sets" table provides an overview of each paralogous region analyzed, including the estimated total copy number. The "Paralogous regions" view provides visualization of the haplotype-resolved variant calls within each paralogous region. The following example shows the MRJD phased variant calls for *PMS2-PMS2CL*.

![MRJD DRAGEN reports Example](/files/4rn7deCGgvjED5Q9OVb4)

Figure 3. Example of visualizing MRJD results in DRAGEN Reports. Here the dark orange represents alternative allele for a reference difference site between the paralogous regions, the light orange represents reference allele for a reference difference site, the grey represents non-reference difference site variant.


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://help.connected.illumina.com/illumina-trupath-genome/data-visualizations-and-analysis/visualize-data-in-dragen-reports.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
