Microorganism Reporting File format
Enrichment panel
Template file
How to edit the template file
First, we recommend saving the provided template file with a new name
Do not add any new columns and do not delete any columns from the template file
Do not change or remove any text from the header row. **The "kmer_read_count" metric is only valid with the UPIP enrichment panel.
Example user-defined microorganism reporting file
See example below for 6 RPIP microorganism reporting names. Prediction logic can be specified on a microorganism-by-microorganism basis using multiple parameters and combinatorial logical expressions.
reporting_name
prediction_logic
coverage
median_depth
ani
aligned_read_count
rpkm
kmer_read_count