LogoLogo
Illumina KnowledgeIllumina SupportSign In
DRAGEN Single Cell RNA
  • Home
DRAGEN Single Cell RNA
  • Introduction
  • Get Started
    • Prerequisites
  • Run Set Up
    • Sample Sheet Introduction
    • Run Planning in BaseSpace Sequence Hub
    • Sample Sheet Requirements
    • Manual Launch on BaseSpace
  • Analysis Methods
    • FASTQ Processing
    • Error Correction
    • Transcript Counting
    • PIPseq CRISPR Mode
  • Analysis Results
    • Accessing Results
    • DRAGEN Report
      • Single-Cell RNA
      • Single-Cell Clustering
      • Trimmer
      • DRAGEN FastQC
      • Mapping
    • Secondary Analysis Results
  • Tertiary Analysis
    • Illumina Connected Multiomics
Powered by GitBook
On this page
  • UMAP Plot
  • Top Marker Genes

Was this helpful?

Export as PDF
  1. Analysis Results
  2. DRAGEN Report

Single-Cell Clustering

UMAP Plot

The UMAP plot allows visualization of individual cells in 2D space to capture the similarities between cells. Clustering is performed using the Louvain method.

Top Marker Genes

The Top Marker Genes table includes the top 10 marker genes for each cluster of the UMAP. For each gene, the gene name, ENSEMBL gene ID, log2 fold change, and pValue are shown. The contents of the table are also available in CSV format by selecting Download CSV.

PreviousSingle-Cell RNANextTrimmer

Last updated 22 days ago

Was this helpful?