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DRAGEN Single Cell RNA
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DRAGEN Single Cell RNA
  • Introduction
  • Get Started
    • Prerequisites
  • Run Set Up
    • Sample Sheet Introduction
    • Run Planning in BaseSpace Sequence Hub
    • Sample Sheet Requirements
    • Manual Launch on BaseSpace
  • Analysis Methods
    • FASTQ Processing
    • Error Correction
    • Transcript Counting
    • PIPseq CRISPR Mode
  • Analysis Results
    • Accessing Results
    • DRAGEN Report
      • Single-Cell RNA
      • Single-Cell Clustering
      • Trimmer
      • DRAGEN FastQC
      • Mapping
    • Secondary Analysis Results
  • Tertiary Analysis
    • Illumina Connected Multiomics
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  • Trimmed Reads
  • Trimmer Metrics

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  1. Analysis Results
  2. DRAGEN Report

Trimmer

Trimmed Reads

Metric
Description

Input Reads

Total number of input reads to DRAGEN

Max Read Length

Maximum detected input read length

Average Input Read Length

Average input read length to DRAGEN, after any adapter trimming by BCL Convert

Masked

Total number 3’ Poly-G bases masked from mapping

Trimmed

Total number of reads trimmed by DRAGEN

Filtered

Total number of reads removed from the input by DRAGEN

Trimmer Metrics

Metric
Description

Fixed-Length

Total number of fixed-length trimmed reads

Adapter

Total number of adapter trimmed reads

PreviousSingle-Cell ClusteringNextDRAGEN FastQC

Last updated 4 months ago

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