Bulk RNA-Seq and ATAC-Seq Integration Training

Agenda with start times:

  • Data set overview (00:01:14)

  • Bulk RNA-Seq analysis pipeline (00:02:40)

  • ATAC-Seq alignment (00:39:47)

  • Filter alignment (00:42:30)

  • Peak detection and chromosome view (00:46:10)

  • Filter peaks (00:57:00)

  • Peak annotation (01:00:20)

  • Compare peak regions across samples (01:07:43)

  • Compare peak regions across different samples (01:12:24)

  • Motif detection (01:19:05)

  • RNA-Seq and ATAC-Seq integration (01:22:25)

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