Spatial Transcriptomics Data Analysis Training

Agenda with start times:

• What is Partek Flow (00:1:39)

• Importing spatial transcriptome data (00:5:20)

• QA/QC, filter, and normalize data (00:13:25)

• Exploratory analysis (00:20:05)

• Batch effect removal and graph-based clustering (00:27.53)

• Integrate spatial and gene expression data (00:35.50)

• Detect differentially expressed genes (00:41:15)

• Pathway analysis and biological interpretation (00:45:15)

• Spatial transcriptome pipeline (00:50:13)