Spatial Transcriptomics Data Analysis Training
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Partek
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Agenda with start times:
What is Partek Flow (00:1:39)
Importing spatial transcriptome data (00:5:20)
QA/QC, filter, and normalize data (00:13:25)
Exploratory analysis (00:20:05)
Batch effect removal and graph-based clustering (00:27.53)
Integrate spatial and gene expression data (00:35.50)
Detect differentially expressed genes (00:41:15)
Pathway analysis and biological interpretation (00:45:15)
Spatial transcriptome pipeline (00:50:13)