> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/partek/partek-flow/live-training-event-recordings/spatial-transcriptomics-data-analysis-training.md).

# Spatial Transcriptomics Data Analysis Training

{% embed url="<https://youtu.be/_WCBjbipLr0>" %}

**Agenda with start times:**

* What is Partek Flow (00:1:39)
* Importing spatial transcriptome data (00:5:20)
* QA/QC, filter, and normalize data (00:13:25)
* Exploratory analysis (00:20:05)
* Batch effect removal and graph-based clustering (00:27.53)
* Integrate spatial and gene expression data (00:35.50)
* Detect differentially expressed genes (00:41:15)
* Pathway analysis and biological interpretation (00:45:15)
* Spatial transcriptome pipeline (00:50:13)


---

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