Viewing a dot plot for a gene
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Last updated
Last updated
In addition to the volcano plot showing all genes, we can view expression levels of each gene on a dot plot.
Double-click the Filtered feature list data node to open the task report
Click the FDR step up header in the 5uM vs. 0uM section to sort by ascending FDR step up
In the task report table, there is a column labeled View with three icons in each row.
Select to open a dot plot for the gene KLHDC7B
The dot plot for KLHDC7B (Figure 1) shows each sample as a point with normalized reads count on the y-axis. Samples are separated and colored by treatment group.
For more information about the dot plot, please see the Dot Plot user guide. To return to the DESeq2 report, switch to the browser table with filtered feature list.
If you need additional assistance, please visit our support page to submit a help ticket or find phone numbers for regional support.
In the DESeq2 report, you can select to view additional information about the statistical results for a gene or select to view the region in Chromosome View. Chromosome View is discussed in the next section of the tutorial.
