# Adding a Variant Effect Predictor (VEP) Database

Click the **+ Add VEP database** button under the *VEP database* section on the [library file management page](https://help.connected.illumina.com/partek/partek-flow/user-manual/settings/components/library-file-management/library-file-management-page).

If you are using an species supported by Partek (i.e., human, mouse, rat), a VEP database from [ENSEMBL](http://www.ensembl.org/info/data/ftp/index.html) will be available for automatic download. Select the **Download database** radio button and click **Create** (Figure 1).

![Figure 1. For certain model organisms, automatic downloads of VEP databases are available](https://1384254481-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FJVEESmJAPppJ3ijFq5aR%2Fuploads%2Fgit-blob-6e9f023c34a5cd1183ae0c9b607af12756226ad0%2Fadd-vep-auto.png?alt=media)

If you are working with a custom assembly, choose the **Import database** radio button and click **Create** (Figure 2). A VEP database can be added from the *Partek Flow Server* or a *URL* download link. The behavior of each option is similar to when importing a reference sequence (see [Adding a Reference Sequence](https://github.com/illumina-swi/partek-docs/blob/main/docs/partek-flow/user-manual/settings/components/library-file-management/adding-reference-sequence.md)). ENSEMBL maintains an extensive list of VEP databases for various species. We recommend going to [ENSEMBL's ftp download site](http://www.ensembl.org/info/data/ftp/index.html) and finding the VEP database download link for your species of interest.

![Figure 2. VEP databases can be added for other species](https://1384254481-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FJVEESmJAPppJ3ijFq5aR%2Fuploads%2Fgit-blob-0b068b4db229fbb7941439f9a94e737f4a7f3e95%2Fadd-vep-custom.png?alt=media)

One VEP database is allowed per genome assembly. Once a VEP is successfully imported, the **+ Add VEP database** button will not be shown (Figure 3).

![Figure 3. Successful addition of a VEP database library file](https://1384254481-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2FJVEESmJAPppJ3ijFq5aR%2Fuploads%2Fgit-blob-a7983f02cee0ba56dd4704385181a30785e08bdf%2Fvep-added.png?alt=media)

## Additional Assistance

If you need additional assistance, please visit [our support page](http://www.partek.com/support) to submit a help ticket or find phone numbers for regional support.


---

# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://help.connected.illumina.com/partek/partek-flow/user-manual/settings/components/library-file-management/adding-a-variant-effect-predictor-vep-database.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
