# Differential Analysis

Powerful Partek Flow statistical analysis tools help identify differential expression patterns in the dataset. These can take into account a wide variety of data types and experimental designs.

* [GSA](https://help.connected.illumina.com/partek/partek-flow/user-manual/task-menu/differential-analysis/gsa)
* [ANOVA/LIMMA-trend/LIMMA-voom](https://help.connected.illumina.com/partek/partek-flow/user-manual/task-menu/differential-analysis/anova-limma-trend-limma-voom)
* [Kruskal-Wallis](https://help.connected.illumina.com/partek/partek-flow/user-manual/task-menu/differential-analysis/kruskal-wallis)
* [Detect alt-splicing (ANOVA)](https://help.connected.illumina.com/partek/partek-flow/user-manual/task-menu/differential-analysis/detect-alt-splicing-anova)
* [DESeq2(R) vs DESeq2](https://help.connected.illumina.com/partek/partek-flow/user-manual/task-menu/differential-analysis/deseq2-r-vs-deseq2)
* [Hurdle model](https://help.connected.illumina.com/partek/partek-flow/user-manual/task-menu/differential-analysis/hurdle-model)
* [Compute biomarkers](https://help.connected.illumina.com/partek/partek-flow/user-manual/task-menu/differential-analysis/compute-biomarkers)
* [Transcript Expression Analysis - Cuffdiff](https://help.connected.illumina.com/partek/partek-flow/user-manual/task-menu/differential-analysis/transcript-expression-analysis-cuffdiff)
* [Troubleshooting](https://help.connected.illumina.com/partek/partek-flow/user-manual/task-menu/differential-analysis/troubleshooting)