> For the complete documentation index, see [llms.txt](https://help.connected.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.connected.illumina.com/partek/partek-flow/user-manual/task-menu/post-alignment-tools/downscale-alignments.md).

# Downscale alignments

The **Downscale alignments** task can be invoked on data node containing bam/sam files, e.g. *Aligned reads* data node. The only parameter to specify is the percentage of the alignments to keep in the results, the range of the parameter should be between 0 to 100 (Figure 1). All the samples in the input data node will use the same parameter. The output data node contains bam files with a subset of the alignments.

<figure><img src="/files/djVo1lhWN1BGPoIjmxJP" alt="" width="375"><figcaption><p>Figure 1. Default filter alignments settings</p></figcaption></figure>

## Additional Assistance

If you need additional assistance, please visit [our support page](http://www.partek.com/support) to submit a help ticket or find phone numbers for regional support.


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://help.connected.illumina.com/partek/partek-flow/user-manual/task-menu/post-alignment-tools/downscale-alignments.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
