# User Manual

Partek Genomics Suite is a comprehensive suite of advanced statistics and interactive data visualization specifically designed to reliably extract biological signals from noise. Designed for high-dimensional genomic studies containing thousands of samples, Partek Genomics Suite is fast, memory efficient and will analyze large data sets on a personal computer. It supports a complete workflow including convenient data access tools, identification and annotation of important biomarkers, and construction and validation of predictive diagnostic classification systems.

* [Lists](/partek/partek-genomics-suite/user-manual/lists.md)
* [Annotation](/partek/partek-genomics-suite/user-manual/annotation.md)
* [Hierarchical Clustering Analysis](/partek/partek-genomics-suite/user-manual/hierarchical-clustering-analysis.md)
* [Gene Ontology ANOVA](/partek/partek-genomics-suite/user-manual/gene-ontology-anova.md)
* [Visualizations](/partek/partek-genomics-suite/user-manual/visualizations.md)
* [Visualizing NGS Data](/partek/partek-genomics-suite/user-manual/visualizing-ngs-data.md)
* [Chromosome View](/partek/partek-genomics-suite/user-manual/chromosome-view.md)
* [Methylation Workflows](/partek/partek-genomics-suite/user-manual/methylation-workflows.md)
* [Trio/Duo Analysis](/partek/partek-genomics-suite/user-manual/trio-duo-analysis.md)
* [Association Analysis](/partek/partek-genomics-suite/user-manual/association-analysis.md)
* [LOH detection with an allele ratio spreadsheet](/partek/partek-genomics-suite/user-manual/loh-detection-with-an-allele-ratio-spreadsheet.md)
* [Import data from Agilent feature extraction software](/partek/partek-genomics-suite/user-manual/import-data-from-agilent-feature-extraction-software.md)
* [Illumina GenomeStudio Plugin](/partek/partek-genomics-suite/user-manual/illumina-genomestudio-plugin.md)

Additional information can be found in the manual for Partek Genomics Suite version 6.6.

{% file src="/files/8aslCtx1IZnXGhEzMnWG" %}

## Additional Assistance

If you need additional assistance, please visit [our support page](http://www.partek.com/support) to submit a help ticket or find phone numbers for regional support.


---

# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://help.connected.illumina.com/partek/partek-genomics-suite/user-manual.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.