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When organizations embrace openness and accessibility, they can pool their expertise to enhance interpretation of genomic data. This collaboration can lead to more accurate and comprehensive interpretations of genomic information, potentially resulting in advancements in medical research, diagnostics, and personalized healthcare.
emedgene aims to simplify the process of sharing cases among healthcare organizations, while ensuring that patient privacy and consent are respected.
The Network allows users to review tagged variants from other organizations within their network(s). The Related Cases section on the Variant page displays shared case data that is relevant to the variant being reviewed.
Level of sharing of a particular case with a particular network of collaborators is defined by:
One organization may participate in multiple networks under different terms.
Networks are being managed by the network admin in Settings > Network.
Here the dedicated network manager can:
Create networks and set data sharing policy for each network;
Leave or delete networks.
As of 32.0, to invite other organizations to their network(s), the network manager must reach out to techsupport@illumina.com.
The user can opt in or out of Extended data sharing during case creation based on the patient's consent. This is a mandatory field that cannot be edited later via edit case flow.
A case with Extended data sharing consent will share both Restricted fields and Extended fields in the Related Cases section of the Variant page, whereas a case without consent will only share Restricted fields. Whether a field is Restricted or Extended is defined by the network setup.
Notes:
In the Add new case UI, default case subject consent for Extended data sharing is set to “Yes”, except for cases that ran on platform versions 31 and earlier.
When using API to create cases, the sharing_level
field is used to indicate whether the case subject consented to Extended data sharing. Valid inputs include: restricted
and extended
. If not specified, the default value is restricted
.
Your organization can be a member of different Public and Private networks at the same time.
In Settings > Network, click on Create Network.
Enter the desired network name.
Select between Public and Private options.
Click on Create Network again.
Navigate to > Network > Network table and find the desired network. Click on Manage in the corresponding row.
On the Manage Network page, select the specific data fields that you want to keep as .
Once you've made your selections, click Save to apply the changes.
The Public network is accessible and viewable by all organizations within the region. This openness encourages collaboration among different entities within the specified area. Marked by a globe icon in Settings > Network > Network table.
On the other hand, we understand that certain operations require a more exclusive approach. That's where the Private network comes into play. This network is visible for invited organizations only, ensuring a heightened level of privacy and security.<br/<>Marked by globe lock icon in Settings > Network > Network table.
Go to Settings > Network > Network table.
Find the network you want to delete and click on Manage.
Scroll to the bottom of the Manage network page and click on Delete Network.
In the warning window, click Yes, I'm sure to confirm the deletion.
Please note that this action is irreversible, so make sure you want to delete the network before proceeding.
We offer four sharing modes that are set for each type of data per network:
Network configuration is done by the network manager in Settings > Network. One organization may participate in multiple networks under different terms.
Mandatory
always shared by default
Not shared
never exposed to the network
Restricted
shared in cases with or without patient’s consent to Extended sharing
Extended
shared only in cases with patient’s consent to Extended sharing
Data field
Applicable level of sharing
Case ID
Mandatory
Collaborator
Mandatory
Overlap (CNV)
Mandatory
Pathogenicity
Mandatory
Variant Details (CNV)
Mandatory
ACMG Tags
Not shared / Restricted / Extended
Age
Not shared / Restricted / Extended
Alt Repeats (STR)
Not shared / Restricted / Extended
Case Type
Not shared / Restricted / Extended
Date
Not shared / Restricted / Extended
Ethnicity
Not shared / Restricted / Extended
Phenotypes
Not shared / Restricted / Extended
Proband ID
Not shared / Restricted / Extended
Selected Disease
Not shared / Restricted / Extended
Sex
Not shared / Restricted / Extended
Tag
Not shared / Restricted / Extended
Variant Interpretation
Not shared / Restricted / Extended
Zygosity
Not shared / Restricted / Extended
Go to Settings > Network > Network table, and find the network you want to leave. Click on Leave in the corresponding row.
A warning window will appear, simply click on Leave to confirm.