Secondary Analysis Results

<Sample_ID>.scRNA.bam

Binary Alignment Map (BAM) files containing information about all reads in the input FASTQ files that were mapped to the reference genome

<Sample_ID>.scRNA.bam.bai

Index file for the BAM for use by downstream applications

<Sample_ID>.scRNA.barcodeCounts.txt

Text file containing the counts per barcode

<Sample_ID>.scRNA.barcodeSummary.tsv

Summary of barcode statistics

<Sample_ID>.scRNA_metrics.csv

Single cell metrics summary with assay sensitivity and quality metrics

<Sample_ID>.scRNA.matrix.mtx.gz

Sparse matrix with rows that represent features and genes detected, and columns that consist of all barcodes that were detected

<Sample_ID>.scRNA.features.tsv.gz

Information about the features corresponding to the rows of the sparse matrix

<Sample_ID>.scRNA.barcodes.tsv.gz

List of barcodes corresponding to the columns of the sparse matrix

<Sample_ID>.scRNA.filtered.matrix.mtx.gz

Filtered sparse matrix with rows that represent features and genes detected, and columns that consist of all barcodes that were detected

<Sample_ID>.scRNA.filtered.features.tsv.gz

Information about the features corresponding to the rows of the filtered sparse matrix

<Sample_ID>.scRNA.filtered.barcodes.tsv.gz

List of barcodes corresponding to the columns of the filtered sparse matrix