Quick Start
Quick Start Guide
Table 1. Release Information
ICA
urn:ilmn:ica:pipeline:a11697ba-1144-4dc6-9e22-f21dff29f747#Heme_WGS_TO_v4_4_4_62
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ICA UI
See ICA Cloud
{version} is used to represent the software version number in Table 1 above. Similarly,
<pipeline_run_script>
is used to indicate the client program name in this document.
Download, Install and Execute on a Local Server
The software may be downloaded and installed by following the installation guide. It may be executed using a local DRAGEN server or on a local computer which launches the analysis in the ICA cloud environment.
Run analysis on a local DRAGEN Server
The command line program may be used to launch an analysis by using the <pipeline_run_script>
with the appropriate options.
start from bcl
start from one or more input folders when using FASTQ, BAM or CRAM files
Multiple folders may be specified as input folders in comma separated values when using FASTQ, BAM or CRAM files as input.
Pressing Ctrl+C during a DRAGEN step stops the currently running analysis and might cause an FPGA error. To recover from an FPGA error, shut down and restart the server.
Run analysis on ICA using the icav2 client
Here is an example of starting an analysis using the ICA client by providing the necessary command parameters and specify a particuar storage size for analysis in ICA.
Run analysis on ICA using UI
The same analysis example above may be completed using the ICA UI by logging into the appropriate domain of your company and project where the Heme pipeline is set up.
Find more information in the ICA Cloud App Launch Guide.
Turn Around Time Comparison
ICA
Coming soon.
Local Server
Local Server Only
Coming soon.
Data Streaming from NFS
Coming soon.
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