| Sample | |
| Input Reads | Total input reads |
| Mapped Reads | Total mapped reads |
| % Mapped | Percentage of mapped reads |
| Average Read Length | Estimated average read length per sample |
| Average @ Score | Estimated average Q score per sample |
| Average % GC Content | Estimated Average %GC content per sample |
| Index | Sample index |
| Sample | Sample ID defined by fasta names |
| Input Reads | Total reads input both mapped and unmapped |
| Mapped Reads | Number of mapped reads |
| % Mapped | Percentage of mapped reads from total reads |
| Unmapped Reads | Number of unmapped reads |
| % Unmapped | Percentage of unmapped reads from total reads |
| Index | Sample Index |
| Sample | Sample ID defined by fasta names |
| miRNA | Number of reads mapped to micro RNAS |
| rRNA | Number of reads mapped to ribosomal RNA |
| tRNA | Number of reads mapped to transfer RNA |
| mRNA | Number of reads mapped to messenger RNA |
| piRNA | Number of reads mapped to piwi-interacting RNA |
| Hairpin | Number of reads mapped to hairpin |
| Other RNA | Number of reads mapped to other RNA types than the ones described above |
| Index | Sample Index |
| Sample | Sample ID |
| Too Short | Reads with a length shorter than 16 nucleotides after adapter trimming with Cutadapt |
| No Adapter | Reads containing no adapter sequence (AACTGTAGGCACCATCAAT) |
| UMI defective | Reads lacking a unique molecular identifier are defective or missing |
| Uncharacterized Mappable | During multiple alignment processes, reads are assigned their corresponding RNA identities. Uncharacterized mappable reads refer to those not classified as a specific RNA type but can be aligned to the reference genome |
| Uncharacterized Unmappable | Uncharacterized and unmappable RNA refers to RNA sequences that cannot be assigned to a specific RNA category or aligned with a reference genome |