Install DRAGEN TruSight Oncology 500 Analysis Software
Last updated
Last updated
In addition to DRAGEN TruSight Oncology 500 Analysis Software, the installation script installs the required DRAGEN server software dependencies. The script uninstalls any existing DRAGEN server software versions. To uninstall DRAGEN TruSight Oncology 500 Analysis Software, refer to Uninstall DRAGEN TruSight Oncology 500 Software
Contact Illumina Customer Care to obtain the DRAGEN TruSight Oncology 500 Analysis Software installer package.
Download the DRAGEN TruSight Oncology 500 Analysis Software installation package provided in the email from Illumina. The link expires after 7 days.
Make sure no other analysis is being performed. Installing DRAGEN TruSight Oncology 500 Analysis Software while performing other analyses might cause interference between the operation of the installer and running Docker containers.
Copy the install script to the /staging directory to store the script in the directory.
Use the following command to update the run script permission:
/chmod +x /staging/install_DRAGEN_TSO500-2.5.2.run
Use the following command to run the installation script, which runs for approximately 20 minutes:
/sudo TMPDIR=/staging/staging/install_DRAGEN_TSO500-2.5.2.run
The script installs compatible DRAGEN software and removes any previously installed versions.
During the installation process, you might be instructed to reboot or power cycle the system to complete the installation of the DRAGEN software installation. A power cycle of the system requires the server be shut down and restarted.
Log out of the server and then log back in.
Use the following command to build the DRAGEN server hash table, which runs for approximately 60 minutes:
/usr/local/bin/build-hashtable_DRAGEN_TSO500-2.5.2.sh
Refer to if any errors occur.
Install your DRAGEN server licenses as follows.
If your server is connected to the Internet, activate your DRAGEN_TSO500 software licenses as follows.
Test and confirm that the server is connected to the Internet. Example: ping www.illumina.com
To activate the license, enter: /opt/edico/bin/dragen_lic -i auto
For servers not connected to the internet, contact Illumina Customer Service for license information.
After installing DRAGEN server licenses, generate a list of installed DRAGEN server licenses by running the following command: /opt/edico/bin/dragen_lic If license installation is successful, the list should include TSOCombined. If you have a license for HRD, the list should include TSO500_HRD. If the expected licenses are not installed, contact Illumina Customer Care.
Make sure the system functions properly by running the following command: /usr/local/bin/check_DRAGEN_TSO500-2.5.2.sh
The script checks the following functions:
If all required services are running.
If the proper Docker image is installed.
If the Illumina DRAGEN TruSight Oncology 500 Analysis Software successfully runs on a test data set.
The self-test runs for approximately 25 minutes. If the self-test prints a failure message, contact Illumina Technical Support and provide the /staging/check__.tgz output file.
If using MacOS, an error can occur if the local settings are not in English. To resolve the error, disable the ability to set environment variables automatically in Terminal settings.