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Document Revision History

2024 October 30 - ICA v2.30

  • Data Management

    • Added information to indicate that the action to link data is now only possible from the root level of your project. Previously, this was possible on all levels, but the data was always linked on root level which was not in line with user expectations

    • Improved description of linked folders, now indicating that linking in linked folder and creating subfolders in linked folders is not possible

    • Added note explaining that there is a discrepancy between the API specification and the actual response for the GET /api/projects/{projectId}/analyses/{analysisId}/outputs endpoint because analysisData is retained for backward compatibility

    • Clarified that adding a "New folder name" when moving data to another folder does NOT rename a folder. Instead, it creates a new folder to move data to. You can rename a folder by moving files to a new folder, then deleting the original contents

    • Added information about which AWS storage classes are supported and how they map to statuses for ICA data

    • Added note to advise users to use Intelligent tiering without the Archive and Deep Archive tiers, as these tiers are currently not supported

    • If data is modified in the source or destination folder of a Move job before the Move job is complete, this will lead to the job aborting. Added documentation for how to fix this issue if it occurs

    • Added information that move jobs will fail if any files being moved are in the "Partial" or "Archived" state. For copy jobs, files in the "Partial" or "Archived" state will be skipped

  • Flow

    • Added information about JSON based pipeline input forms

    • Improved descriptions of scratch space

    • Documented possible causes of exit code 55 for analysis failure (external event such as spot termination, node draining, ...)

  • Bench

    • Updated Bench workspace documentation to indicate the storage size can be between 1GB and 16TB

    • Updated information on bring your own bench image software volumes

2024 September 25 - ICA v2.29.0

  • General

  • Data Management

    • Added information that "Has access + archive" should not be used as permission in IAM

    • Updated storage settings for Indonesia, Israel, and UAE regions

    • Added troubleshooting information on "Unable to generate credentials from the objectstore as the requested path is too long."

    • Documented that storage credential actions are now integrated with the grid view

    • Added information on how dynamic linking works. This replaces static linking

    • Added warning that when you move data from one location to another, you should not change the source data while the Move job is in progress, as this will result in jobs getting stuck in progress

  • Flow

    • Fixed broken link on Basic Nextflow Tutorial page

  • Bench

    • Added explanation on how to use bring-your-own-bench-image functionality

    • Added information on how to open Jupyter notebook workspaces in a new tab

2024 August 28 - ICA v2.28.0

  • General

    • General updates and improvements

    • Transferred cross-product content, such as cloud-analysis auto-launch, to Illumina Connected Software help site

    • Updated the link for software registration from ICA to the cross-product ICS software registration page

    • Replaced all instances of "volume configuration" with "storage configuration" for consistency, as they have the same definition

    • Created a new page in the "Reference" section for Document Revision History, separating it from Software Release Notes

  • Data Management

    • Added information on how the Service Connector determines when files can be transferred to prevent partial files from being processed

    • Documented the new 100 concurrent file upload limit on GUI-side upload

  • CLI

    • New version of the CLI documentation

  • Notifications

    • Corrected configuration explanation error in the configure notifications section for Amazon SQS

  • Flow

    • Added information on how to resubmit an analysis with modified values

    • Added information that setting the Nextflow XML to multiValue="true" will result in ICA treating it as a list

    • Documented the limitation of tags. The limit is 500 characters per tag and no more than 250 tags per tag type

    • Sorting on duration is not supported and has been removed from the GUI as duration is dynamically calculated when it is requested

    • Documented how the user is now able to write a pipeline which executes files located in the /data/bin directory of the runtime environment

    • Updated a screenshot in the CWL Dragen pipeline creation section

    • Documented the new files tab on the pipeline screen which provides an easier overview of files related to your pipeline

  • Base

    • Added an example query for how to obtain the costs incurred by the individual steps of an analysis

  • Bench

    • Corrected file path in Jupyter Notebooks section

    • Added hint that using the option "latest" for public docker images increases the likelihood of errors

    • Improved explanation of how workspace permissions work

  • Cohorts

    • Updated Cohorts information

  • Storage

  • Network Settings

  • Workgroups

    • Documented that there is now an "all workgroup" option to easily reset workgroup filtering

    • Added a hint that your BaseSpace workgroup needs access to ICA if you want to use BSSH-managed projects

2024 June 25 - ICA v2.27.0

  • General

    • Added tutorial in ICS docs for how to manually launch pipelines on NovaSeq X data by linking data from externally-managed project to ICA projects

  • Data Management

    • Added information on allowed search field characters when searching for projects or data

    • Added a note to clarify that data is always linked to the root folder of the project

    • Documented that single files can now be directly downloaded without the need to open them first

  • API

    • Added guidance on how to prevent excessive API requests from exceeding the ICA API rate limit

    • Added a description to the API guide of how to copy multiple files with an API request

  • CLI

    • Added a warning to not use the CP -f command to copy or move data to a mounted location, as this will result in data loss

    • Updated CLI Command Index

  • Notifications

    • The data unarchived event ICA_DATA_114 has been added to the list of notification codes

  • Flow

    • Documented how the user is now able to write a pipeline which executes files located in the /data/bin directory of the runtime environment

2024 June 5 - ICA v2.26.0

  • General

    • General updates and improvements

    • Added mention of the collapsible menu bar in a brief overview of the GUI

    • Moved content in the Troubleshooting Guide from References section to relevant sections in the docs

    • Added a tutorial to demonstrate how to create and launch a Nextflow pipeline using the ICA CLI

  • Data Management

    • Added information on copying Docker images and reference data to different regions

    • Added hint that the service connector or CLI should be used for uploading large files

    • Added information about how bundles and projects need to be in the same region in order to be linked

    • Documented how there will no longer be a status displayed when adding an external docker image, as the status would always be shown as active even when the external image could not be reached

    • Added data formats: adat, zarr, tiff and wsi to the list of supported file types

  • API

    • Added information on how to set API keys

    • Corrected the example for cursor-based pagination, which was using offset-based parameters

  • CLI

    • Updated command index with new commands

    • Updated the CLI release history with new build

  • Notifications

    • Added how to create SNS notifications in a region different from where the control plane is installed

  • Flow

    • Corrected the statement that, for CWL pipelines, creating a scratch space has to be done as part to the requirement section instead of a hint

    • Included how the analysis-details URL now points to the correct information when sharing the URL from your browser with other users

    • Added information for three new transfer compute types: transfer-small, transfer-medium, and transfer-large

    • Documented system capacities to reflect that there is a maximum of 50 concurrent runs per tenant

  • Bench

    • Updated URL whitelist expression for restricted bench workspaces

    • Updated Bench reference docs with details about when workspace will be stopped if not accessed for long duration

  • Cohorts

    • Added information on sharing a Cohort as a Bundle

  • Storage

    • Added guidance on using key prefixes when setting up an S3 storage configuration

    • Added a list of common issues encountered when connecting an AWS S3 bucket through a storage configuration to the Troubleshooting Guide

2024 April 24 - ICA v2.25.0

  • General

    • Added video demo for Oncology Walkthrough guided example

    • Added video demo for how to connect an AWS S3 bucket to ICA

    • Removed obsolete Instrument Run Upload tutorial, now replaced with Sequencer Integration tutorial

    • Updated sequencer integration guide

    • Improved the description for “Tenant” billing mode

  • Data Management

  • Added information about how to create a new service connector from the “Schedule for Download” screen

  • Added information about the character limit for links in bundles and pipelines

  • CLI

    • Documented the new CLI environment variable ICA_NO_RETRY_RATE_LIMITING, which disables the retry mechanism

    • Updated the CLI release history with new build

  • Flow

    • Added information on how ICA compute type will be determined based on CPU and Memory

  • Bench

    • Updated documentation to reflect how paths can be added to allowed URLs on restricted setting for Bench

2024 March 27 - ICA v2.24.0

  • General

    • General updates and improvements

    • Updated the table of contents to match the Connected Analytics sidebar

    • Updated region named "Europe" to "Germany" for consistency with other regions named by country

    • Updated sequencer reference guide to reflect support for DRAGEN Amplicon autolaunch analysis using the NextSeq 1000/2000

    • Added link to ICA YouTube channel which contains video demos to Resources page

  • Data Management

    • Documented how folders cannot include a backslash in their name

    • Documented how you can copy data between folders within the same project

  • API

    • Added information on how to start a pipeline with the API to the ICA API Beginner Guide

    • When using the Sample Creation Batch API endpoint to link nested files with the same name, the duplicate file on the root level will be ignored instead of resulting in an error. The API documentation has been updated to reflect this.

  • CLI

    • Updated the CLI release history with new build

  • Flow

    • Documented how additional files related to your Nextflow or CWL pipeline will be displayed alphabetically

    • Updated the CWL CLI Workflow tutorial to include a description of the behavior for how `runtime.ram` and `runtime.cpu` are evaluated

    • Updated analysis lifecycle documentation to include all analysis statuses

  • Base

    • Updated the Base Tables documentation to reflect how defining the precision of numbers when creating tables with SQL is not supported as this will result in a rounding issue

    • Updated Base Tables documentation to reflect how you can now see the Load Status of files uploaded to the table

    • Updated the Base Query documentation to inform users how to find the correct capitalization to use when querying the ICA reference data, which is case sensitive

  • Bench

    • Updated documentation to reflect how paths can be added to allowed URLs on restricted settings for Bench

  • Storage

    • Updated the AWS S3 help guide to include information about S3 bucket policies

    • Revised the Storage Configuration Troubleshooting Guide to be a general Troubleshooting Guide and included a section for data transfer issues

  • Network Settings

    • Updated the "Network Settings" reference page with URLs for Indonesia and UAE

2024 February 28 - ICA v2.23.0

  • General

    • General updates and improvements to reflect changes in graphical user interface

    • Added a tutorial to demonstrate the end-to-end user flow for planning a NovaSeq X run with BaseSpace Run Planner and performing the run with data storage and automated analysis in ICA

    • Updated the list of auto-launch analysis workflows in the Sequencer Reference table

  • Data Management

    • Updated the list of addresses which need to be whitelisted for the service connector

  • Notifications

    • Updated the list of Notification Subscriptions to include all possible notifications

  • CLI

    • Updated the CLI Command index to reflect addition of --exclude-source-path flag for ‘project data download’ command

  • Flow

    • Added information on how to add scratch space to all processes in a pipeline

    • Added note stating that batch jobs which have a final state such as Failed or Succeeded are removed from the activity list after 7 days

    • For Nextflow version 20.10.10, using the ‘copy’ method in thepublishDir directive for uploading output files that consume large amounts of storage may cause workflow runs to complete with missing files. Added information on workarounds to prevent this from occurring.

  • Bench

    • Added the 500GB limit per file for the FUSE driver

2024 January 31 - ICA v2.22.0

  • General

    • General updates and improvements

    • Clarified that bundle assets can only be linked once to the same data set

    • Removed outdated information about creating new tabs from workspace description

    • Added information about stopping Workspaces and removed information about pausing Workspaces, as pausing is no longer an option

    • Added information about creating an OAuth access token

    • Clarified that upload and download rights act independent of user roles

    • Updated the table which shows the regions ICA is hosted on to include all the available regions in alphabetical order

    • Added language specifying that folders with the name '.' are not supported

  • API

  • CLI

    • Updated the CLI release history

  • Flow

    • Added information on how to define scratch space in CWL workflows

    • Described analysis runtime environment used to execute user-defined pipeline tasks, steps, and processes

    • Updated the Nextflow DRAGEN tutorial to account for no default scratch space

  • Base

    • Added explanation of how to query arrays in table data

    • Added information about how to query views from Data Catalogues using the Snowflake FLATTEN function

  • Storage

    • Made it more explicit that the custom bucket name needs to be entered in the IAM configuration

    • Updated instructions for creating an AWS IAM user policy to remove a permission which is not correct

2023 December 05 - ICA v2.21.0

  • General

    • General updates and improvements

    • Updated organization of Table of Contents

  • API

    • Documented how to archive or delete files programmatically using API endpoints

    • Added information about how the sort parameter is used to choose the default pagination

  • Flow

    • Added guidance about the ica_logs subfolder in the analysis output folder

    • Updated default scratch space reference documentation

  • Cohorts

    • Updated documentation to reflect OMOP ingestion and UI search for Procedures. The documentation changes also reflect instruction on the simplified ingestion and comparison sharing

  • Storage

    • Added explanation of the impact of billing mode when users bring their own S3 storage

2023 October 31 - ICA v2.20.0

  • General

  • Data Management

    • Documented an alternate method of adding files to samples and explained how to remove files from samples

    • Provided more guidance on data transfer options

    • Updated reference documentation for Data Copy functionality

    • Added a message to inform users that folder copy can be impacted in cases where a folder with the same name already exists in the target project

    • Added reference documentation for data integrity recommended practices

  • CLI

    • Updated CLI release history

  • Notifications

    • Updated Filtering section of Notifications page

  • Flow

    • Described analysis runtime environment used to execute user-defined pipeline tasks, steps, and processes

    • Updated ‘CWL: Scatter-Gather’ tutorial

    • Added documentation for analysis timeout

  • Base

    • Added a new tutorial for creating a Python dashboard to access Base metrics via API

    • Added information about Snowflake user/role setup

    • Included sample TSV file in Base Basics tutorial

  • Bench

    • Updated Fuse Driver troubleshooting

2023 October 3 - ICA v2.19.0

  • General

    • General updates and improvement

    • Added link to Illumina Knowledge resource

    • Updated analysis autolaunch reference docs

    • Updated the NovaSeq 6000 analysis auto-launch tutorial

    • SDK: Included new reference to Illumina's ICA Python SDK resource available on GitHub.com

  • Data Management

    • Add documentation around storage configuration synchronization behavior

    • Documented the new Data Copy functionality

    • Provided more guidance on data transfer options

    • Added a section describing Data Catalogue functionality

    • Added guidance about not using file names beginning with '/'

    • Service Connector: Added troubleshooting guidance for service connector

  • API

    • Added tip for users experiencing API rate limiting

    • Added troubleshooting guide for GetTemporaryUploadCredentialsAsync failure error scenario

  • CLI

    • Updated the CLI release history page with all required build files

  • Flow

    • Improved the tutorial for Scatter-gather method in Nextflow

    • Improved tutorial for Nextflow: RNASeq Lift

    • Added a tutorial for converting open-source nf-core pipelines to ICA Nextflow pipelines

    • Updated reference docs for starting analyses

    • Improved tutorial for scatter-gather in CWL

  • Base

    • Improved descriptions and scenarios of Base tables and queries

  • Cohorts

    • Documented Cohorts Diagnosis Concept attribute search box functionality

2023 August 31 - ICA v2.18.0

  • General

    • General updates and improvements

    • Added ICA Terminology page to Reference

    • Logging: Documented event logging transfer of ownership

  • Data Management

    • Document how to change Project owner

    • Updated Storage Size table for Compute on Pricing page to include XL, 2XL, 3XL

    • Improved explanation of hiding Projects when connecting to your own S3 bucket for data storage

    • Added default and shared explanation to storage documentation

    • Updated documentation to reflect the temp credentials returned for AWS datastore is for 36 hours

  • CLI

    • Added documentation for CLI config settings

  • Flow

    • Documented event for Analysis status transition

    • Added Nextflow best practices to reduce Analysis failures

    • Updated Pipeline activation code behavior explanation

    • Added documentation for specifying external docker images (i.e. Docker Hub)

  • Base

    • Added a tutorial for using Base via the CLI

    • Updated documentation to mention that Schema does not contain type ‘variant’

    • Documented Base query which joins to tables can result in duplicate columns

    • Documented SnowSQL show view vs show grants

  • Bench

    • Documented Bench permission changes

  • Cohorts

    • RNASeq ingestion

    • Applicable user-supplied RNASeq visualizations – Raw Expression Values in GTEx-like table

    • NeedlePlot

    • Structure Variant list

2023 June 27 - ICA v2.17.0

  • General

    • General improvements and fixes

    • User Management: Added details about how users can manage an overview of their Projects

    • Included a new reference to Illumina’s ICA Python SDK resource available on Github

  • Data Management

    • Clarified the visibility of Batch jobs for different users in a Tenant

    • Bundles: Provided more details about Bundle linking and unlinking with data in folders

  • CLI

    • Updated the CLI command index

    • Updated the CLI release history page with all required build files

    • Added link to legacy ICA v1 CLI release history page

  • Flow

    • Described Analysis runtime environment used to execute user-defined pipeline tasks, steps, and processes

    • Added an explanation for how external S3 files can be used as inputs to Pipelines

  • Bench

    • Added an explanation that Project/Tenant Administrators can stop running Workspaces

    • Added guidance for downloading data when using JupyterLab Notebooks

  • Cohorts

    • Added instructions for RNA-Seq data ingestion into Cohorts

    • Added reference documentation for multi-cohort marker frequency and needle plot comparisons

  • Network Settings

    • Updated the list of whitelisted URLs on https://help.ica.illumina.com/reference/r-networksettings

2023 May 31 - ICA v2.16.0

  • General

    • General updates and improvements

    • User Management: Improved explanation of Team functionality

  • Data Management

    • Added guidance on versioning Bring Your Own storage buckets

    • Improved explanation on linking to data from other projects

    • Described functionality of Secondary Data

    • Updated guidance for file upload size

    • Updated configuration guidance for Bring Your Own Storage bucket using S3

    • Updated list of supported Data formats

    • Added a tutorial for mounting project data using the CLI

  • API

    • Added information to launch analysis API spec on output mappings overwrite behavior when files already exist on the target project during analysis output

  • CLI

    • Added CLI authentication best practices for setting up, validating, and resetting the configuration of a user's profile

  • Network Settings

    • Updated Network Settings regional S3 URLs list

  • Flow

    • Added a tutorial for building and running a CWL graphical pipeline

    • Included best practices for minimizing errors in Nextflow pipelines by adding retry logic

  • Base

    • Updated the Base schedule descriptions to include information about Metadata and Administrative schedules, as well about frequency of scheduled ingestions

  • Bench

    • Updated restrictions of available features when in the FUSE mount in a Workspace

    • Updated descriptions about Bench restrictions, including details about whitelisted URLs

2023 April 25 - ICA v2.15.0

  • General

    • General updates and improvements

    • Updated guidance for selecting Project Location and availability of Storage Bundles when configuring a new Project

    • Updated details about paging in the Event Log

    • Refined and expanded guidance for sequencer integration and analysis auto-launch, including adding a new tutorial for NovaSeq 6000 and expanding the sequencer reference table

    • Added tutorial for using scatter/gather for Nextflow pipeline

    • Updated information about data archive pricing

    • Updated software registration guide

  • Data Management

    • Added guidance that a sample must be complete to be linked to a Bundle

    • Included information about receiving and using Entitled Bundles

  • CLI

    • Updated CLI command index

    • Updated CLI binary and checksum files

  • Flow

    • Refined Pipelines documentation around clone function

  • Base

    • Added information that Base Tables must not contain reserved Snowflake terms in their definition

    • Added description for Copy Number Variants and Structural Variants tables now viewable in ICA Base for Cohorts

  • Cohorts

    • Added description for hg19 support as an alternative during ingestion for Cohorts

2023 March 28 - ICA v2.14.0

  • General

    • General updates and improvements

    • Refined and expanded reference documents for sequencer integration and analysis autolaunch, including new pages for sequencer reference and troubleshooting

    • Added tutorial for setting up a notification service and Lambda function in AWS for chaining pipelines

    • Included guidance for setting override behavior for file output of advanced output mappings

    • Described selection of entitlements when creating a Project

    • Updated FAQ with guidance on analysis run times

    • Updated explanation for adding Terms of Use to a Bundle

    • Included details for the Event Log

  • Data Management

    • Explained how to unlink a folder from a project

  • CLI

    • Updated CLI command index

    • Fixed a bug in the CLI release history files and updated integrity check instructions

  • Flow

    • Described limitation on amount of input files for analyses

  • Base

    • Added tutorial for accessing Base databases and tables via snowSQL

    • Refined and expanded description of Base Activity screen

  • Bench

    • Expanded description of Bench Activity screen

    • Explained multi-factor authentication compatibility with Bench and provide workaround suggestion

  • Cohorts

    • Added instructions to remove specific subjects from a cohort

    • Documented cohort needle plot enhancements: List of subjects and specific frequency data entry

    • Updated cohorts ingestion instruction including metadata documents, GWAS ingestion, OMOP ingestion, Structural Variant ingestion, and hg19 lift-over information

    • Added reference documentation for using Cohorts attributes metadata template

    • Added instruction for cohorts attribute query enhancement on numeric data

  • Storage

    • Clarified details about S3 bucket behavior and Bring Your Own Storage bucket (BYOB) compatibility

  • Network Settings

    • Updated documentation about network settings for pipelines

    • Provided guidance about deleting old versions of Bring Your Own Storage buckets

2023 February 28 - ICA v2.13.0

  • General

    • Added reference documentation for deep links to a folder

    • Updated Nextflow DRAGEN tutorial to include details about how to obtain access to the docker image on ICA

    • Improved documentation about pipeline activation codes

    • Explained limit of number of projects and bundles allowed per tenant

  • Data Management

    • Created new page for and updated list of available data file formats

    • Updated guidance for requirements for adding assets to a bundle

    • Updated service connector reference docs

    • Explained progress details for service connector

    • Added information about archiving or unarchiving a file

  • API

    • Added descriptions of cursor and offset pagination when using the API

  • CLI

    • Expanded explanation of default settings for the CLI

  • Base

    • Added guidance for Base JSON export

    • Updated supported formats for Base table/query export

    • Updated description of Base Activity screen

    • Added guidance for Base schedule's optional parameters

  • Bench

    • Provided documentation for available Bench compute types

2023 February 13 - ICA v2.12.1

  • Added documentation for Analysis auto launch

2023 January 31 - ICA v2.12.0

  • General

    • Updated reference docs for workflow session events

    • Provided details about price-per-sample and zero-cost pipelines

    • Described pipeline Proprietary flag available

  • Data Management

    • Service Connector: Updated information in the service connector screen to reflect the name change from "Type of Files" to the more accurate "Assign Format"

    • Added details about which data formats are compatible with UI Preview

    • Added details about syntax for linking to individual analyses and workflow sessions

    • Explained how to add assets to a bundle

  • CLI

    • Provided a command index for the ICA v2 CLI

    • Expanded explanation on default settings for the CLI

    • Clarified details about hidden metadata files behavior during CLI copy for MacOS users

  • Flow

    • Added information about standard and economy tier selection for compute types

    • Expanded guidance for XML-based input form required of pipelines defined using the "Code" mode

    • Expanded guidance on importing external docker images in ICA when running a pipeline

    • Included information about tile/grid view for analysis logs

    • Added guidance about balancing analysis queuing priorities when setting up a Project

    • Updated information about Batch Jobs

    • Added guidance about overriding CWL workflow requirements

  • Base

    • Added guidance on using Cohorts data in ICA Base

  • Cohorts

    • Included video overview of Cohorts Multiomics Cancer workflow

    • Updated steps for Cohorts ingestion

    • Updated steps for Cohorts analysis

2022 December 13 - ICA v2.11.0

  • General

    • Added guidance about modifying existing Tools already added to a Pipeline

    • Updated tutorial for building a DRAGEN pipeline using Nextflow

  • Notifications

    • Updated list of system event notifications

  • Flow

    • Clarified expected behavior and recommended order of steps when connecting input to Tools and editing Input Details when building graphical CWL pipelines

    • Added information about details for monitoring Batch Jobs in Project Activity Screen

    • Added Pipeline “tips and tricks"

  • Storage

    • Added guidance on expected behavior when configuring user-managed AWS Buckets with Projects

2022 November 8 - ICA v2.10.0

  • General

    • Added tutorial for using scatter/gather for CWL graphical pipelines

    • Added information about Documentation tab in Nextflow pipelines

    • Updated links and fixed typos

  • Data Management

    • Provided list of ICA-supported data file formats

  • API

    • Included guidance on creating custom events for projects via the API

2022 October 17 - ICA v2.9.0

  • General

    • Added tutorial for building DRAGEN pipeline using Nextflow on ICA

    • Added tutorial for building DRAGEN pipeline using CWL on ICA

    • Added XML configuration documentation and examples

    • Added metadata model documentation

    • Updated supported ICA regions

    • Updated fields and descriptions under Tool Settings

  • Data Management

    • Added data privacy recommendations regarding uploading data files

    • Added guidance on supported characters in file/folder names

    • Added documentation for linking bundles to a project

  • Cohorts

    • Added ICA Cohorts Module documentation, including summary of features and example walk-throughs

  • Storage

    • Added instructions for setting up ICA v2 Bring Your Own Bucket (BYOB) with SSE-KMS key

    • Updated bucket name character length constraints

2022 September 12 - ICA v2.8.0

  • General

    • Added Quick Registration Guide

    • Added documentation for metadata models

    • Added tutorial for creating/running CWL pipeline on CLI

    • Added end-to-end tutorial highlighting DRAGEN Germline pipeline

  • Data Management

    • Added documentation for reference data

  • Flow

    • Added documentation for analysis output mappings

    • Added documentation for Nextflow configuration

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