7.39.0 - BaseSpace Downloader 3.0

October 21, 2025

Features

• Updated the BaseSpace Downloader to version 3.0. For more details, see What's New.

• Added the 'DRAGEN Server' analysis location in Run Planning. Use this option to export the sample sheet to analyze sequencing data on a standalone DRAGEN server.

• Manual mode runs from NovaSeq X and MiSeq i100 instruments without a sample sheet will now transition to 'complete' following upload. Previously these runs were marked as 'needs attention'.

• Improved performance when loading the Microarray Analysis Setup tool.

Bugs Fixed

• Fixed an issue that could cause a "Separator must begin with the + sign" error when uploading a FASTQ file.

• Fixed an issue that could cause a run or project transfer to become stuck.

• Fixed an issue with the Analysis file browser that could cause files to display under the incorrect folder.

• Fixed an issue that could cause a run status to stay 'Pending Analysis' after analysis aborts.

• Fixed an issue in Microarray Analysis Setup where file upload was silently failing.

• Fixed an issue in the Analysis list page Application filter that showed duplicated application names.

• Fixed the Application filter in the Analysis list page to include the ICA Workflow Session Tracking app.

• Fixed an issue when launching an analysis from the CLI where the default analysis name is not generated correctly.

Known Issues

• The copy and merge features are currently unavailable for samples generated by BCL Convert.