Cases List
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The Cases list shows Case IDs for the cases in your workgroup. Connected Insights creates a case for each imported secondary analysis result, and then populates the case with the variants called for the sample. Subject and sample custom case data for each case are entered as part of the custom case data files from the metadata.csv file which can be picked up through the data uploader (see ), via an API (see ), or through the UI (see ). From here, you can import analysis results and begin working with a case.
The case status tag provides additional information about the progress of a case from creation to report generation.
Case ID — Indicates the unique ID for the case. Select a case to open it.
Created Date — Indicates the date that the case was created. The default sort is descending.
Status — Indicates the status of the case. – Awaiting Molecular Data — Analysis files not added. – Missing Required Data — The case is missing fields like disease or the required test definition. – Ready for Processing — The case has all required information and is ready for ingestion. – Processing — Annotation and ingestion of the case is in process. – Has Issue — The upload case failed. Select the case for details. Contact Illumina Technical Support for guidance. – Ready for Interpretation — Variants are ingested and ready to be interpreted. – Report(s) Signed Off — Report is approved and signed off.
Workflow Type — Indicates the type of analysis available for this case: DNA, RNA, or DNA+RNA.
[Optional] Sex — The biological sex of the subject: male, female, or unknown.
Disease — The disease associated to the case. It is a required field for processing the case. You can provide disease information from a SampleSheet.csv, a custom case data file, or add it via the user interface.
Tags — Free text labels associated to the case. You can create new labels by entering a value or use autocomplete to select existing values.
Participants — The users assigned to the case. You can add users from a dropdown of all users that are a member of the workgroup.
❗ If the case data definition is configured, the case and subject level fields display as columns by default.
To delete a case from the Case List grid as follows:
Navigate to the case to be deleted.
Right of the Case Id, select the "..." menu. This menu is only visible to the Lab Director role with the required Illumina Connected Analytics (ICA) permissions. See note below.
Select Delete Case.
Confirm the delete.
❗ The case and any associated subject or sample data, if the subject or sample is not associated to any other cases, is deleted (ICA files, case data, audit log data, variant data, and report data). Case deletion is restricted by role. The user must have the Connected Insights role of Lab Director and the user or the workgroup must have an "ADMINISTRATOR" role in the ICA project associated with the Connected Insights workgroup. The generic format for the ICA Project associated with Connected Insights Workgroup is
ICI_[region]_[workgroup_name]_Project.
Show, hide, and reorder columns in the Case List grid for a custom view of data in the tab as follows:
Hover over a column header and select the menu button.
To move a column, drag the column to a position in the grid.
Select the menu button next to the column name and change any of the following options:
Pin a column to a position or to the left or right sections of the grid.
Automatically resize the column to display all of the content in the selected column.
Auto-size all columns to display all content for all displayed columns.
Select the filter icon and the sort drop-down menu to filter by keywords and information.
Select the display icon to check or uncheck columns that appear in the Cases list.