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DRAGEN Protein Quantification
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DRAGEN Protein Quantification
  • Get Started
    • Introduction
    • Prerequisites
      • Illumina Protein Prep Automation System Output Files
  • Run Setup
    • Run Planning with the BSSH Run Planner Tool
    • Sample Sheet Fields
    • Local Sample Sheet Generation Tool
    • Lane Splitting and Multi-Analysis by Project
  • Counting and Normalization
    • Cloud Autolaunch Secondary Analysis
      • Accessing Cloud Results
    • Local Secondary Analysis
    • Normalization Summary
    • QC Summary
    • Interpretation of Results
    • Metrics Appendix
  • Output Files
    • Output Structure
    • DRAGEN Report
    • ADAT Content
  • After Counting and Normalization
    • Using the ADAT
    • Illumina Connected Multiomics Walkthrough
  • References
    • FAQs
    • Documentation Revision History
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  1. Counting and Normalization

Local Secondary Analysis

DRAGEN Protein Quantification can be run locally after the installation of the local solution on a DRAGEN phase 4 server by an FAS.

To initiate a run:

DRAGEN_Protein_Quantification-<version>.sh
    -r <full path to run folder>
    -s <full path to samplesheet>
    --analysisFolder <full path to output folder> 

The --analysisFolder parameter is optional. If no path is provided, output files will be put in a subdirectory of the folder where the command is being run.

The -s parameter is optional if the sample sheet file is included in the run folder.

For details on the parameters used with the script, execute the following command.

DRAGEN_Protein_Quantification-<version>.sh -h
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