Local Secondary Analysis

DRAGEN Protein Quantification can be run locally after the installation of the local solution on a DRAGEN phase 4 server by an FAS.

To initiate a run:

DRAGEN_Protein_Quantification-<version>.sh
    -r <full path to run folder>
    -s <full path to samplesheet>
    --analysisFolder <full path to output folder> 

The --analysisFolder parameter is optional. If no path is provided, output files will be put in a subdirectory of the folder where the command is being run.

The -s parameter is optional if the sample sheet file is included in the run folder.

For details on the parameters used with the script, execute the following command.

DRAGEN_Protein_Quantification-<version>.sh -h