Output Structure

DRAGEN Protein Quantification produces the following key output files in BaseSpace Sequence Hub:

• DRAGEN_Protein_Quantification_<SW Version>

  • <project> (if no projects are provided, there shall be one folder titled with the RunName)

    • adat

      • <output file prefix>_FinalNormStep_MedNormExt.adat: This file contains the final normalized counts for the samples in this project.

      • other_normalization_steps: This folder contains all intermediate normalized ADATs with their respective counts.

    • quality metrics

      • <output file prefix>_run_qc_stats.csv: This file provides a summary of per sample run qc statistics.

    • DRAGEN Report

• DRAGEN Report: Folder containing all projects DRAGEN report file/s

• Extra Files

• ICA Logs: Folder containing information on ICA logs

Example of Output Structure in BSSH

The example below contains an analysis configured with two Projects, "1_x" and "0_x". Analysis and outputs are processed for each project individually (check Multi-Analysis section for details).

Each project folder (highlighted in yellow) includes "quality_metrics" and "adat" folders, along with a DRAGEN Report. The final normalized counts file (FinalNormStep_MedNormExt.adat) is available for each project and can be used in exploratory analysis.