LogoLogo
CtrlK
Illumina KnowledgeIllumina SupportSign In
  • Home
  • Get Started with Emedgene
    • Get started with Emedgene
    • How can Emedgene help you solve a case?
  • Emedgene Analyze manual
    • Getting around the platform
      • Top navigation panel
      • Emedgene applications menu
      • Dashboard tab
      • Cases tab
        • Cases table
        • Cases table navigation panel
        • Case details
          • Case info
          • Family tree
          • Activity
        • How to open a case
        • How to customize Cases table view
        • How to filter cases
        • How to search for cases
        • How to group cases
        • How to sort cases
        • How to delete cases
      • Settings
      • Help
      • Okta identity management
    • Managing data storage
      • Manage data storages
      • Manage S3 credentials
      • Manage ICA storage
      • Storage providers
        • Manage Azure Blob storage
        • Manage Google Cloud storage (V37.0+)
        • Manage BaseSpace storage
      • Bring Your Own Bucket
      • Bring Your Own Key
    • Supported variant callers
    • Launching analysis
      • Creating a single case
        • Add a new case
        • Select sample type
        • Create a family tree
        • Family tree legend
        • Add a sample
        • Adding patient info for the proband
        • Adding patient info for the non-proband samples
        • Incidental (secondary) findings
        • Case type and region of interest
        • Sequencing information
        • Gene list
        • Preset groups
        • Supported parental ethnicities
        • Labeling a case
      • Creating multiple cases
        • Batch case upload from platform
        • CSV format requirements
        • Batch case upload via CLI
    • Reviewing a case
      • Individual case page
      • Case status
        • Out-of-the-box case statuses
        • How to update a case status
        • Case statuses management
      • Individual case page: Top bar
      • Case details
      • Candidates tab
        • Reviewing the Candidates tab
        • Most Likely Candidates and Candidates
      • Lab tab
        • Summary dashboard
        • Sequencing lab information section
        • Case quality section
        • Sample quality section
          • NGS sample quality metrics
            • NGS sample quality
            • NGS sex validation
            • Ploidy
            • Contamination
            • Coverage
            • Percentage of mapped reads
            • Sequencing error rate
          • Array sample quality metrics
            • Array sample quality
            • Array sex validation
            • CNV overall ploidy
            • Autosomal call rate
            • Call rate
            • Log R deviation
          • DRAGEN QC report
            • Review interactive DRAGEN report
            • Download DRAGEN QC metrics files
            • Prepare DRAGEN QC metrics files to be included in a VCF case
        • Pedigree section
        • Genes coverage section
      • Genome view tab
      • Analysis tools tab
        • Analysis tools tab (≤38.0)
          • Variant table
            • Variant table columns
            • Variant table row formatting
            • Variant table view customization
            • Multiselection of variants and bulk actions
            • Manually add variants to a delivered case
            • Download variants
          • Filters/Presets panel
            • Variant search
            • Filters
              • Quality filters
              • Polymorphism filters
              • Variant type filters
              • Variant effect filters
              • In silico predictions filters
              • Gene filters
              • Phenomatch filters
              • Inheritance filters
              • Zygosity filters
              • Evidence & Tags filters
            • Presets
        • Analysis tools tab (39.0+)
          • Viewing modes
          • Variant table
            • Variant table columns
            • Variant table row formatting
            • Variant table view customization
            • Multiselection of variants and bulk actions
            • Download variants
          • Filters/Presets panel
            • Variant search
            • Filters
              • Quality filters
              • Polymorphism filters
              • Variant type filters
              • Variant effect filters
              • In silico predictions filters
              • Gene filters
              • Phenomatch filters
              • Inheritance filters
              • Zygosity filters
              • Evidence & Tags filters
            • Presets
      • Versions tab
      • Evidence page
      • Phenotypic match
        • Phenotypic match models
        • Phenotypic match strength
      • Editing an existing case
      • Reflex genetic testing
      • Finalizing a case
      • Clinical Report
      • Variant zygosity notations
      • STR calling and interpretation
      • In Silico Predictions Filters
    • Reviewing a variant
      • Variant page
      • Variant page top bar
      • Variant tagging widget
        • Multiple tags
      • Summary tab
      • Clinical significance tab
      • Quality tab
      • Visualization tab
      • Population statistics tab
      • Connected variants tab
      • Related cases tab
        • Network data view controls
        • Pathogenicity trend bar
        • Related cases table
        • CNV overlap percentage filter
          • One-way CNV annotation overlap
      • Evidence tab
        • ACMG SNV Classification wizard
        • Logic behind ACMG classification of SNVs
        • Individual ACMG criteria evaluation
        • ACMG CNV Classification wizard
      • Variant page sidebar
    • Variant visualization
      • Variant visualization tool
        • Viewing modes
        • Visualization tracks
        • Visual aids
        • Manually add variant from IGV
      • Variant visualization setup
        • Enabling visualization for a VCF case
        • Integration between Emedgene and desktop IGV
        • Loading alignment files to your desktop IGV
    • Analyze Network
      • Analyze Network Setup
      • Network sharing configuration
      • Case subject consent for extended sharing
      • Public vs Private network
      • Create a network
      • Set network data sharing policy
      • Leave a network
      • Delete a network
    • Settings
      • My settings
      • Management
      • User roles management
      • Network
      • Organization settings
        • Workbench & Pipeline
        • Environment
        • Lab Workflow
        • Kit Management
        • Quality parameters (38.0+)
        • General
          • Report timezone (38.0+)
    • Integrations
      • Automatic Case Creation from ICA - Cyto Array Analysis
      • API Beginner Guide
      • Advanced API Implementations
      • API Key Generation
      • BSSH Integration
      • ICA Integration
      • Webhook Integration
  • Emedgene Curate manual
    • Curate overview
      • Curate overview
      • Emedgene Applications menu
      • Curate navigation panel
      • Genome assemblies supported by Curate
    • Curate Variants
      • Curate Variants overview
      • Curate Variant table
      • Curate Variant page
      • How to add a variant to Curate
      • How to delete a variant in Curate (39.0+)
      • Curate Variant annotations in the case
    • Curate Genes
      • Curate Genes overview
      • Curate Gene table
      • Curate Gene page
      • How to add a gene to Curate
    • Import Curate annotations to the case
      • Import Curate Variant annotations to the case
      • Import Curate Gene annotations to the case
  • Integrations
    • API Beginner Guide
  • Frequently Asked Questions
    • All FAQ
      • Which browser should I use with Emedgene?
      • Emedgene annotations and update frequency
      • How do I use developer tools to collect logs?
      • Can I analyze Illumina Complete Long Reads in Emedgene?
      • How do I prepare VCF files generated by DRAGEN MANTA to be used as input for Emedgene?
      • Source of gnomAD data for small variants on GRCh38
      • How are MNVs handled on the platform?
      • Support for gene lists with up to 10,000 genes
      • Genomic Regions by Case Type
      • How do I analyze mtDNA variants?
      • Can I use exome data for CNV detection?
      • How does joint calling work on Emedgene?
      • What is the required format for a BED file defining a kit?
      • Which reference genomes can I use?
      • How do I move between organizations?
      • How do I check the version of my environment?
      • "Failed to generate report". What should I do?
      • How do I prepare VCF files generated by Dragen STR (ExpansionHunter) to be used as input?
      • How does Emedgene Analyze prioritize transcripts?
      • How does Emedgene Analyze merge variants from different sources?
      • Performance issue troubleshooting
      • How does Emedgene calculate variant effect and severity ?
      • How are timekeeping and log timestamps kept accurate and consistent?
  • Release Notes
    • Workbench & Pipeline Updates
      • New in Emedgene V38.0 (June 3rd, 2025)
        • V38 Patches
      • New in Emedgene V37.0 (February 20, 2025)
        • V37 Patches
      • New in Emedgene V36.0 (October 8 2024)
        • V36 Patches
      • New in Emedgene V35.0 (May 22nd 2024)
        • V35 Patches
      • New in Emedgene V34.0 (January 28th 2024)
        • V34 Patches
      • More release notes
        • New in Emedgene V33.0 (September 6th 2023)
          • V33 Patches
        • New in Emedgene V32.0 (June 8th 2023)
          • New pipeline 32 (June 8th 2023)
          • V32 Patches
        • New in emedgene 31 (March 1st 2023)
        • New in Emedgene 30 (January 8th 2023)
        • New in Emedgene 2.29 (August 25 2022)
        • New pipeline 5.29 (May 1st 2022)
        • New in Emedgene 2.28 (May 1 2022)
        • New in Emedgene 2.27 (March 7, 2022)
        • New in Emedgene 2.26 (Dec 14, 2021)
        • New in Emedgene 2.24-2.25 (Aug 11, 2021)
        • New in Emedgene 2.23 (Jun 15, 2021)
        • New in Emedgene 2.19-2.22 (Apr 8, 2021)
        • New in Emedgene 2.16-2.19 (Dec 7, 2020)
        • New in Emedgene 2.12-2.16 (Oct 18, 2020)
    • Knowledgebase Updates
      • 2025
        • Zoidberg 80 (July 31st 2025)
        • Variant Databases (July 23th 2025)
        • Zoidberg 79 (June 18th 2025)
        • Variant Databases (June 18th 2025)
        • Zoidberg 78 (April 16th 2025)
        • Variant Databases (March 30th 2025)
        • Zoidberg 77 (March 17th 2025)
        • Zoidberg 76 (February 3rd 2025)
        • Zoidberg 75 (January 6th 2025)
      • 2024
        • Variant Databases (December 8th 2024)
        • Zoidberg 74 (December 2nd 2024)
        • Zoidberg 73 (October 21th 2024)
        • Variant Databases (September 22nd 2024)
        • Zoidberg 72 (September 10th 2024)
        • Variant Databases (July 21st 2024)
        • Zoidberg 71 (July 24th 2024)
        • Zoidberg 70 (June 3rd 2024)
        • Zoidberg 69 (April 19th 2024)
        • Variant Databases (April 9th 2024)
        • Zoidberg 68 (March 18th 2024)
        • Variant Databases (February 5th 2024)
        • Zoidberg 67 (January 28th 2024)
        • Variant Databases (January 5th 2024)
      • 2023
        • Zoidberg 66 (December 24th 2023)
        • Variant Databases (December 3rd 2023)
        • Zoidberg 65 (November 21th 2023)
        • Variant Databases (November 5th 2023)
        • Zoidberg 64 (October 24th 2023)
        • Variant Databases (October 8th 2023)
        • Zoidberg 63 (September 18th 2023)
        • Variant Databases (September 5th 2023)
        • Zoidberg 62 (August 23th 2023)
        • Zoidberg 61 (August 16th 2023)
        • Variant Databases (August 6th 2023)
        • Zoidberg 60 (July 30th 2023)
        • Variant Databases (July 2nd 2023)
        • Zoidberg 59 (June 18th 2023)
        • Variant Databases (June 4th 2023)
          • Variant Databases (May 7th 2023)
        • Zoidberg 58 (May 21th 2023)
        • Zoidberg 57 (April 16th 2023)
        • Variant Databases (April 2nd 2023)
        • Zoidberg 56 (March 19th 2023)
        • Variant Databases (March 11th 2023)
        • Zoidberg 55 (February 19th 2023)
        • Zoidberg 54 (January 16th 2023)
    • Change log
      • Change log pipeline v34
      • Change log pipeline 31
      • Change log workbench 31
      • Change log pipeline 30
      • Change log workbench 30
      • Change log workbench 2.29
      • Change log pipeline 5.29
      • Change log workbench 2.28
  • Legal
    • Privacy, Security & Compliance
    • Release Policy
Powered by GitBook
On this page

Was this helpful?

  1. Emedgene Curate manual

Curate Genes

Curate Genes overviewCurate Gene tableCurate Gene pageHow to add a gene to Curate
PreviousCurate Variant annotations in the caseNextCurate Genes overview

Last updated 1 year ago

Was this helpful?