For the complete documentation index, see llms.txt. This page is also available as Markdown.

Curate Variant table

The Curate Variant table displays all variants stored in your organization’s Curate database. Use it to review variants at a glance.

You can:

  • Sort the table by any column

  • Reorder columns by drag-and-drop

  • Adjust column width

Curate Variant Table
Customizing Curate Variant table view

Use the search box above the Curate Variant table to quickly find variants. You can search by:

  • Gene symbol (e.g., BRCA1)

  • Genomic position (e.g., chr17:43071077)

  • Variant type (e.g., SNV, DEL, DUP)

The table updates automatically based on your search.

Note: CNV variants are included in results when the searched gene or position falls within the CNV range.

Variant table columns

The Curate Variant table displays all variants stored in your organization's Curate database, along with key variant identifiers, pathogenicity classifications, and network interpretation data.

Gene

Gene identifier.

  • SNV/Indel/single-gene CNV: An HGNC-approved gene symbol

  • Multi-gene CNVs: A list of HGNC-approved gene symbols and the number of genes included if only part of the list is shown.

Tip: If only the beginning of the list is displayed in the table, you can see the full gene list in the pop-up tooltip. Supports alphabetical sorting.

Type

Specifies whether the variant is SNV, Indel, CNV, SV, STR, or other.

Supports alphabetical sorting.

Variant Details

Displays genomic coordinates and basic variant identifiers.

Variant details reflect the genome reference selected in the left navigation panel.

  • SNV/Indel: Genomic position, nucleotide change, and dbSNP ID

  • CNV/SV: Genomic coordinates and variant size

Supports sorting by genomic start location.

Pathogenicity

Pathogenicity classification.

Supports alphabetical sorting.

Network

Displays pathogenicity classifications assigned by partnering organizations.

The column uses a color-coded indicator that summarizes how the variant is classified across the network:

  • Red: Pathogenic or Likely Pathogenic.

  • Orange: VUS.

  • Green: Benign or Likely Benign.

  • Mixed colors: Connected organizations have assigned conflicting classifications.

  • No indicator: No connected organization has assigned classification.

Tip: hover over the badge to see pathogenicity.

Supports alphabetical sorting.

Last updated

Was this helpful?