Lab QC Tab

The Lab QC tab within a case provides basic assay, workflow, and output metrics. If a case was created from merging DNA and RNA, then DNA and RNA tabs are selectable before the Overview section.

Overview Legend

Field Name	Description
Source	Description
Assay	The name of the assay as specified in the uploaded metrics file.
Output Date	The output date of the run as specified in the uploaded metrics file.
Output Time	The output time of the run as specified in the uploaded metrics file.
Workflow Version	The workflow version of the run as specified in the uploaded metrics file.
Module Version	The module version of the run as specified in the uploaded metrics file.
Run ID	The ID of the run as specified in the uploaded metrics file.
Run Name	The name of the run as specified in the uploaded metrics file.

Run QC Metrics

Run QC Metrics displays metrics used for the run as specified in the uploaded metrics file.

Field Name	Description
Source	Description
Metric	Metrics used for the run as specified in the uploaded metrics file.Examples include total percentage of reads passing filter and Q30 scores.
Lower Spec Limit	Lower specification limit for metric as specified in the uploaded metrics file.
Upper Spec Limit	Upper specification limit for the metric as specified in the uploaded metrics file.
Value	The value of the metric as specified in the uploaded metrics file.
Pass Status	Indicates whether the metric passed the spec limits as specified in the uploaded metrics file.

Sample QC Metrics

Sample QC Metrics displays metrics used for the sample as specified in the uploaded metrics file.

Field Name	Description
Source	Description
Section	The section for each set of metrics as specified in the uploaded metrics file. Examples include DNA sample QC and RNA sampleQC.
Group	The group for the metrics as specified in the uploaded metrics file(for example, read group).
Metric	Metrics used for the sample as specified in the uploaded metrics file. Examples include median exon coverage and median fragment length.
Lower Spec Limit	Lower specification limit for the metric as specified in the uploaded metrics file.
Upper Spec Limit	Upper specification limit for the metric as specified in the uploaded metrics file.
Sample/Pair ID	The sample/pair ID of the case.