User roles

Emedgene users are defined by roles. Roles are managed in Settings > User Management. Access to the User Management tab is restricted to those with the appropriate permission.

The available roles for Emedgene are described below:

User Role	Description	Component / Flow	User Level
Acmg Tags	Allows to see ACMG Tags	Analyze > Variant page	All
Acmg Tags Edit	Allows to edit ACMG classification	Analyze > Variant page	Analyst, Director, Manager
Add New Test	Allows to manually create a case or (32.0+) upload a batch of cases via .csv	Analyze > Add a new case	Analyst, Director, Manager
Apidocs	Allows to see API documentation	Analyze	IT team
Auto Analysis	Allows to see the AI Shortlist analysis results	Analyze > Variant page	All
Candidate Compound With	Allows to combine two compound variants by gene name on the candidate page	Analyze > Case page	Analyst, Director, Manager
Change Finalized Test Status	Allows to unlock a finalized case	Analyze > Case page	Director, Manager
Check Preset	Allows to implement Presets from a list	Analyze > Case page	Analyst, Director, Manager
Comment	Allows to send a comment	Analyze > Case page	Analyst, Director, Manager
Comment Delete	Allows to delete a comment	Analyze > Case page	Manager
Create Report	Allows to generate report template	Analyze > Clinical report	Director, Manager
Create Variant	Allows to create an additional variant	Analyze > Case page	Director, Manager
Developer	Allows to see developer settings (Webhook)	Analyze	IT team
Download	Allows to download files	Analyze > Case page	Analyst, Director, Manager
Due Date	Allows to edit due date	Analyze > Case page	Analyst, Director, Manager
Edit Test	Allows to edit test's info	Analyze > Case page	Analyst, Director, Manager
Evidence	Allows to see evidence page	Analyze > Variant page	All
Evidence Edit	Allows to edit evidence page	Analyze > Variant page	Analyst, Director, Manager
Evidence Generate	Allows to generate initial evidence	Analyze > Variant page	Analyst, Director, Manager
Evidence Pathogenicity Edit	Allows to edit evidence pathogenicity	Analyze > Variant page	Analyst, Director, Manager
Evidence Text Edit	Allows to edit evidence text (Variant interpretation)	Analyze > Variant page	Analyst, Director, Manager
Gene Lists Read Only	Allows to show the gene list	Analyze	All
Gnomad Genome	Allows to see GnomAD genome data annotation	Analyze > Variant page	All
KMS	Allows to access Emedgene Curate	Curate	All
KMS Create Gene	Allows user to create a new gene in KMS	Curate	Manager
KMS Create Variant	Allows to create new variant in KMS	Curate	Manager
KMS Export	Allows user to export from varpage to the KMS	Curate	All
KMS Import Network Variant	Allows user to import variants from Network to Curate	Curate	Manager
KMS Update Disease ID	Allows to update disease ID of the variant in KMS	Curate	Manager
KMS Update Gene Interpretation	Allows user to update gene interpretation in KMS	Curate	Manager
KMS Update Gene Transcript Ref Sequence	Allows user to update a gene selected transcript in KMS	Curate	Manager
KMS Update Gene Note	Allows user to update gene note in KMS	Curate	Manager
KMS Update Interpretation	Allows to update interpretation of the variant in KMS	Curate	Manager
KMS Update Note	Allows to update variant note in KMS	Curate	Manager
KMS Update Pathogenicity	Allows to update pathogenicity of the variant in KMS	Curate	Manager
KMS Update Transcript	Allows to update transcript of the variant in KMS	Curate	Manager
Load Bam IGV	Allows to synchronize external IGV viewer with the platform	Analyze > Case page	All
Manage Case Default Page (34.0+)	Allows to set a default page upon entering a case	Analyze > Settings	Manager
Manage Case Identifier (33.0+)	Allows to set a custom case identifier	Analyze > Settings	Manager
Manage Column Order (34.0+)	Allows to customize the default order of Variant table columns.	Analyze > Settings	Manager
Manager Edit Variant Tags	Allows user to manage variant tags	Analyze > Settings	Director, Manager
Manage Gene List	Allows to create, edit gene lists	Analyze > Settings	Manager
Manage Gene List Visibility	Allows to manage gene list visibility	Analyze > Settings	Manager
Manage Kit Bed (30.0+)	Allows user to manage kits and bed uploads	Analyze > Settings	Manager
Manage Labels	Allows to manage labels	Analyze > Settings	Manager
Manage Platform Version (33.0+)	Allows to set a platform version	Analyze > Settings	Manager
Manage S3 Credentials (32.0+)	Allows to create access key and secret key; deactivate, activate and delete access key.	Analyze > Settings	Manager
Manager Support Access (31.0+)	Enable/disable support access to the organization	Analyze > Settings	Manager
Manage Test Presets	Allows to create Presets from gene lists, filter	Analyze > Settings	Analyst, Director, Manager
Manage URL Pattern (33.0+)	Allows to set a platform version	Analyze > Settings	Manager
Manager	Organizational admin (manager) role	Analyze	Manager
Multiple Storage	Allows to change the organization URL pattern	Analyze > Settings	Manager
Network	Allows to see available networks, request to join networks, leave networks, approve or reject invitations to join networks, edit existing networks of organization	Analyze > Settings	Manager
Network Create	Allows to create a new network	Analyze > Settings	Manager
Network Manage (32.0+)	Allows to create a network and define its sharing policy; leave networks	Analyze > Settings	Manager
Phenomatcher	Allows to filter by phenotypic match	Analyze > Case page	All
Preset Create (34.0+)	Allows to create Presets from active filters	Analyze > Case page; Analyze > Settings	Analyst, Director, Manager
Preset Group Create (34.0+)	Allows to create and edit Preset groups	Analyze > Settings	Analyst, Director, Manager
Preset Group Default (34.0+)	Allows to set a default Preset group	Analyze > Settings	Manager
Preset Group Download (34.0+)	Allows to download a legacy (V1) Preset group JSON file	Analyze > Settings	Manager
Preset Group Hide (34.0+)	Allows to hide a Preset group from the Preset groups list offered at case creation	Analyze > Settings	Analyst, Director, Manager
Preset Group Revert (34.0+)	Allows to revert migration of a legacy Preset group	Analyze > Settings	Manager
Preset Delete (34.0+)	Allows to delete a non-locked Preset	Analyze > Settings	Analyst, Director, Manager
Preset Lock (34.0+)	Allows to lock and unlock editing the Preset	Analyze > Settings	Manager
Preset Manage (34.0+)	Allows to view and edit a Preset in JSON format	Analyze > Settings	Manager
Re Upload Tab	Allows to re-upload files	Analyze > Case page	Analyst, Director, Manager
Render Template	Allows to create a variant interpretation paragraph on the fly	Analyze > Clinical report	Analyst, Director, Manager
Report	Allows to export a report as a PDF	Analyze > Clinical report	Director, Manager
Report Preview	Allows to preview report	Analyze > Clinical report	All
Sanger Edit	Allows to edit Sanger sequencing information	Analyze > Variant page	Analyst, Director, Manager
Storage Provider	Allows to manage storage providers	Analyze > Settings	Manager, IT team
Tag Variant	Allows to tag a variant	Analyze > Variant page	Analyst, Director, Manager
Test Status	Allows to change test status	Analyze > Case page	Analyst, Director, Manager
Test Status Move to Trash	Allows to assign a Move to trash Case status	Analyze > Case page	Manager
Test Status to Finalized	Allows to change case status to finalized	Analyze > Case page	Director, Manager
Transcript Edit	Allows to change the default transcript for variants	Analyze > Variant page	Analyst, Director, Manager
Unknown Phenomatch	Allows to use Unknown Phenomatch variant filter	Analyze > Case page	All
Upload	Allows to upload files to be associated to a case	Analyze > Add a new case	Analyst, Director, Manager
User	Regular user role	Analyze	All
User Management	Allows to manage users	Analyze > Settings	Manager
User Read (30.0+)	Allows users access to organization data	Analyze	All
User Rerun Case	Allows to rerun cases	Analyze > Edit case info	Analyst, Director, Manager
Versions Tab	Allows seeing the versions tab	Analyze > Case page	All

If you are not seeing part of the roles from the user management interface, please be in touch with our support.