Post-alignment tools

Post-alignment tools involve tasks that can be performed on aligned data. These are typically used in preparing aligned data for other downstream analyses, such as DNA-Seq or RNA-Seq analysis.

To invoke Post-alignment tools, click on an Aligned reads data node (Figure 1). There are three functions available in Post-alignment tools:

• Filter alignments

• Convert alignments to unaligned reads

• Combine alignments

• Deduplicate UMIs

• Downscale alignments

Figure 1. Invoking Post-alignment tools

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