Sequencer Auto-launch Analyses Compatibility
This page provides guidance on sequencer compatibility with different versions of DRAGEN secondary analysis pipelines and applications with auto-launch capabilities. This includes:
Pipelines with cloud analysis auto-launch. This type of workflow is available for BaseSpace and ICA users and includes automatic launch of secondary analysis in the cloud after sequencing completion.
Applications installed onboard of sequencers and on DRAGEN servers paired with sequencers. These type of applications allow you to configure settings for the run and analysis upfront and launch secondary analysis automatically after sequencing completes.
Tertiary analysis compatibility. Click on underlined versions in the table to view details on pipelines’ compatibility with Emedgene and Illumina Connected Insights.
This table does not cover all DRAGEN pipelines and applications. If a pipeline is not included in the table, it means that the auto-launch may not be available for it at all or not available for a specific instrument/pipeline combination. In this case, the pipeline could be used with the instrument if launched manually in BaseSpace, ICA or on the DRAGEN server. Non-DRAGEN pipelines are not included. Please check Local Run Manager materials and other resources on Illumina Support Center for additional onboard applications.
Pipeline | NextSeq 1000/2000 | NextSeq 1000/2000 | NovaSeq X Series | NovaSeq X Series | NovaSeq 6000/6000Dx | NovaSeq 6000/6000Dx | NextSeq 500/550/550Dx | MiSeq | MiniSeq | iSeq 100 |
Cloud | Onboard | Cloud | Onboard | Cloud | Paired server | Cloud | Cloud | Cloud | Cloud | |
BCL Convert | v4.2.7 v3.10.4 v3.8.4 v3.7.4 v3.5.8 v3.5.6 | v4.2.7 v3.10.12 v3.10.11 v3.9.3 v3.8.4 v3.7.4 v3.5.8 v3.5.6 | v4.1.23 v4.1.7 | v4.1.23 v4.1.7 v4.1.5 | v3.8.4 | |||||
DRAGEN Germline | v3.5.8 v3.5.6 | v3.5.8 v3.5.6 |
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DRAGEN Enrichment | v3.5.8 v3.5.6 | v3.5.8 v3.5.6 |
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DRAGEN Amplicon |
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DRAGEN TruSight Oncology 500 ctDNA | v2.6.0 | v2.6.0 v1.2 | v2.6.0 | |||||||
DRAGEN RNA | v3.10.4 v3.8.4 v3.7.4 v3.5.8 v3.5.6 | v3.10.12 v3.8.4 v3.7.4 v3.5.8 v3.5.6 |
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DRAGEN Methylation | v4.1.23 | v4.1.23 | ||||||||
DRAGEN Single Cell RNA | v4.2.7 v3.10.4 v3.8.4 v3.7.4 | v4.2.7 v3.10.12 v3.8.4 v3.7.4 | ||||||||
DRAGEN Somatic | ||||||||||
NanoString GeoMx NGS Pipeline | v2.0.21 | v2.0.21 | ||||||||
DRAGEN COVIDSeq Test | v1.3.0 |
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