Sequencer Auto-launch Analyses Compatibility
This page provides guidance on sequencer compatibility with different versions of DRAGEN secondary analysis pipelines and applications with auto-launch capabilities. This includes:
Pipelines with cloud analysis auto-launch. This type of workflow is available for BaseSpace and ICA users and includes automatic launch of secondary analysis in the cloud after sequencing completion.
Applications installed onboard of sequencers and on DRAGEN servers paired with sequencers. These type of applications allow you to configure settings for the run and analysis upfront and launch secondary analysis automatically after sequencing completes.
Tertiary analysis compatibility. Click on underlined versions in the table to view details on pipelines’ compatibility with Emedgene and Illumina Connected Insights.
This table does not cover all DRAGEN pipelines and applications. If a pipeline is not included in the table, it means that the auto-launch may not be available for it at all or not available for a specific instrument/pipeline combination. In this case, the pipeline could be used with the instrument if launched manually in BaseSpace, ICA or on the DRAGEN server. Non-DRAGEN pipelines are not included. Please check Local Run Manager materials and other resources on Illumina Support Center for additional onboard applications.
Pipeline
NextSeq 1000/2000
NextSeq 1000/2000
NovaSeq X Series
NovaSeq X Series
NovaSeq 6000 Dx (RUO mode)
NovaSeq 6000 Dx (RUO mode)
NovaSeq 6000
NextSeq 500/550/550 Dx (RUO mode)
MiSeq i100
MiSeq i100
MiSeq
MiniSeq
iSeq 100
Cloud
Onboard
Cloud
Onboard
Cloud
Paired server
Cloud
Cloud
Cloud
Onboard
Cloud
Cloud
Cloud
BCL Convert
v4.2.7 v3.10.4 v3.8.4 v3.7.4 v3.5.8 v3.5.6
v4.2.9
v4.2.7 v3.10.12 v3.10.11 v3.9.3 v3.8.4 v3.7.4 v3.5.8 v3.5.6
v4.3.13
v4.1.23 v4.1.7
v4.3.13
v4.1.23 v4.1.7 v4.1.5
v3.8.4
v3.9.5
v3.8.4
v1.0.31
v1.0.31
DRAGEN Germline
DRAGEN Enrichment
DRAGEN Amplicon
DRAGEN TruSight Oncology 500 ctDNA
DRAGEN RNA
DRAGEN Methylation
v4.3.13
v4.1.23
v4.3.13
v4.1.23
DRAGEN Single Cell RNA
v4.2.7 v3.10.4 v3.8.4 v3.7.4
v4.2.7 v3.10.12 v3.8.4 v3.7.4
DRAGEN Somatic
DRAGEN for DNA Prep with Enrichment
DRAGEN cfDNA Prep with Enrichment
DRAGEN Protein Quantification
v1.8.33
v1.7.80
NanoString GeoMx NGS Pipeline
v2.0.21
v2.0.21
DRAGEN COVIDSeq Test
v1.3.0
DRAGEN Library QC
v4.3.13
DRAGEN Small WGS
v4.3.13
DRAGEN Microbial Enrichment Plus
v4.3.13
Last updated