LogoLogo
Illumina KnowledgeIllumina SupportSign In
  • Home
  • Start Here
  • Overview
    • Software Overview
    • What's New
    • FAQ
    • Technical Assistance
    • Release Notes
    • Data Model
    • Account Types
    • Professional Services
  • Automate
    • Data Automation Overview
    • Automatic Data Flow
    • Automatic Data Aggregation
      • Unlock Biosamples
      • Correct Aggregation
    • Request A Lab Requeue
    • Yield
    • Yield Examples
      • Example 1
      • Example 2
      • Example 3
    • Automate Lane QC
    • Manual QC
    • Statuses
  • Manage Data
    • Import Demo Data
    • Delete Data
    • Import Data Into Projects
      • FastQ Upload Requirements
    • Download Data
      • Download Individual Files
      • Download Datasets
      • Download Run Files
      • Download Project Files
      • Download Analysis Files
      • Download Samples
    • Copy Datasets
    • Transfer Ownership
    • Archival Storage
    • Automatic Data Deletion
  • Sequence
    • Sample Sheets
      • Mapping Sequencing Runs to Biosamples
    • Fix Indexes
    • Plan Runs
      • Plan a NextSeq 1000/2000 Run
        • Set up NextSeq 1000/2000 Secondary Analysis
        • Custom Noise Baseline File
      • Plan a NovaSeq X Series Run
        • Set up NovaSeq X Series Secondary Analysis
        • NovaSeq X Series Custom Reference File
      • Create a Custom Index Adapter Kit
      • Import samples
      • Requeue a Planned Run
      • Analysis Configuration Template
      • Prep Tab
        • Create Biological Samples
        • Import Biological Samples
        • Prep Libraries
        • Import Sample Libraries
        • Set Up a Custom Library Prep Kit
        • Pool Libraries
        • Plan Run Using Prep Tab
        • Neo Prep
          • Configure
          • Assign Wells
          • Review
  • Microarray
    • Getting Started
      • Troubleshooting iScan Integration
    • Analysis Setup
    • Data Management
  • Analyze
    • Analyze Data
    • Launching Apps
    • Analysis Workflows
    • Re-Launch Analysis
    • Auto Analysis QC
    • Basespace Apps
  • Collaborate
    • Sharing Data
    • Access Shared Data
    • Share with Collaborators
      • Share Analyses
      • Track Analysis Delivery Status
      • Share By Link
      • Share By Email
      • Manage Collaborator Access
      • Data Access After Share / Transfer
    • Workgroups
    • Manage Workgroups
      • Access Workgroups
      • Create a Workgroup and Assign Admins
      • Rename a Workgroup
      • Add Users to a Workgroup
      • Remove Users from a Workgroup
      • Add Admins to a Workgroup
      • Remove Admins from a Workgroup
      • Manage User Access
  • Manage Your Account
    • Change Password
    • iCredits and Billing
    • Generate Usage Reports
    • Manage Enterprise Domains
    • Global Regions
  • Developer Tools
    • Basespace API
    • Developer Tools
  • Files Used By Basespace
    • Biosample Workflow Files
    • BAM Files
    • FastQ Files
    • Quality Scores
    • VCF Files
    • gVCF Files
  • Data
    • View Data
      • View Runs
        • View Run Summary
        • View Run Biosamples
        • View Run Samples
        • View Run Charts
        • View Run Metrics
        • View Run Indexing QC
        • View Run Samplesheet
        • View Run Files
      • View Projects
      • View Analyses
      • View Biosamples
  • Projects
    • Create a Project
    • Edit Project Details
  • Runs
    • Fix Sample Sheet
    • Automated Run Zipping
  • Biosamples
    • Biosample Overview
    • Manage Biosamples
    • Biosample Workflow
      • Add Biosamples
      • Add Prep Requests
      • Add Analysis Workflows to an Existing Biosample
      • Schedule Multiple Analysis Workflows for a Biosample
      • Schedule Analysis Workflow - Multiple Biosamples
    • Associating Biosamples with Projects
  • Samples
    • Combine Samples
    • Copy Samples
  • Cmd Line Interfaces
    • Basespace CLI
      • Introduction to Basemount
  • Additional Resources
    • Additional Resources
      • Informatics Blog
      • Coverage Calculator
      • Support Bulletins
      • Training
      • Security Model
      • Data Streaming
      • AWS
  • Releases
    • Previous Releases
      • 2025
        • 7.33.0 - Shared BCL Convert Section
        • 7.32.0 - File Preview in Search
        • 7.31.0 - Usage Explorer
        • 7.30.0 - Prep Tab Deprecation
      • 2024
        • 7.29.0 - Improved Analysis Error Reporting
        • 7.28.0 - MiSeq i100 Support
        • 7.27.0 - App Store Upgrade
        • 7.26.0 - Prep Tab Obsolescence Notification
        • 7.25.0 - Project Column in the Analysis Files Tab
        • 7.24.0 - Requeue Improvements
        • 7.23.0 - BaseSpace CLI v1.6.0
        • 7.22.0 - Analysis Autolaunch for NovaSeq X Manual Mode Runs
        • 7.21.0 - Improved Look and Feel
        • 7.20.0 - Analysis List Improvements
        • 7.19.0 - Transfer of NovaSeq X Projects
        • 7.18.0 - Custom Kit Deletion
      • 2023
        • 7.17.0 - Deletion of Biosample Default Projects
        • 7.16.0 - Transfer of NovaSeq X Runs
        • 7.15.0 - Compatibility Filtering in Run Planning
        • 7.14.0 - Native App Engine Update
        • 7.13.0 - Sharing for NovaSeq X Runs and Analyses
        • 7.12.0 - Combined New and Classic Modes
        • 7.11.0 - NovaSeq X Analysis Requeue
        • 7.10.0 - NovaSeq X Analysis Autolaunch Improvements
        • 7.9.0 - Multi-Analysis Run Planning
        • 7.8.0 - Performance Improvements
      • 2022
        • 7.7.0 - NovaSeqX Support
        • 7.6.0 - Custom Configuration Files in Microarray Analysis Setup
        • 7.5.0 - Performance Enhancements
        • 7.4.0 - Run Planning Enhancements
        • 7.3.0 - Improve App Launch Performance
        • 7.2.0 - FastQ Generation and other Bug Fixes
        • 7.1.0 - FastQ Related Fixes and Performance Improvements
        • 7.0.0 - Datasets and Apps Performance
        • 6.19.0 - ICA Integration Enhancements
        • 6.18.0 - ICA Integration with BCL Convert
        • 6.17.0 - Preliminary ICA Integration
      • 2021
        • 6.16.0
        • 6.15.0
        • 6.14.0
        • 6.13.0
        • 6.12.0
        • 6.11.0
        • 6.10.0
        • 6.9.0
        • 6.8.0
        • 6.7.0
        • 6.6.0
        • 6.5.0
      • 2020
        • 6.4.0
        • 6.3.0
        • 6.2.0
        • 6.1.0
        • 6.0.0
        • 5.46.0
        • 5.45.0
        • 5.44.0
        • 5.43.0
        • 5.42.0
      • 2019
        • 5.41.0
        • 5.40.0
        • 5.39.0
        • 5.38.0
        • 5.37.0
        • 5.36.0
        • 5.35.0
        • 5.34.0
        • 5.33.0
        • 5.32.0
        • 5.31.0
        • 5.30.0
      • 2018
        • 5.29.0
        • 5.28.0
        • 5.27.0
        • 5.26.0
        • 5.25.0
        • 5.24.0
        • 5.23.0
        • 5.22.0
        • 5.21.1
        • 5.21.0
        • 5.20.0
        • 5.19.0
        • 5.18.0
        • 5.17.0
        • 5.16.0
        • 5.15.0
        • 5.14.0
        • 5.13.0
        • 5.12.0
        • 5.11.0
      • 2017
        • 5.10.0
        • 5.9.0
        • 5.8.0
        • 5.7.0
        • 5.6.0
        • 5.5.0
        • 5.4.0
        • 5.3.0
        • 5.2.0
        • 5.1.0
        • 5.0.0
        • 4.27.0
        • 4.26.0
        • 4.25.0
        • 4.24.0
        • 4.23.0
        • 4.22.0
        • 4.21.0
        • 4.20.0
        • 4.19.0
        • 4.18.0
        • 4.17.0
        • 4.16.0
        • 4.15.0
      • 2016
        • 4.14.0
        • 4.13.0
        • 4.12.0
        • 4.11.0
        • 4.10.0
        • 4.9.0
        • 4.8.0
        • 4.7.0
        • 4.6.0
        • 4.5.0
        • 4.4.0
        • 4.3.0
        • 4.2.0
        • 4.1.0
        • 4.0.4
        • 4.0.3
        • 4.0.2
        • 4.0.1
        • 4.0.0
      • 2015
        • 3.23.2
        • 3.23.1
        • 3.23.0 Issues
        • 3.23.0
        • 3.20.4
        • 3.20.3
        • 3.20.0
        • 3.19.1
        • 3.19.0
        • 3.18.0
        • 3.17.1
        • 3.17.0
        • 3.16.2
        • 3.16.0
        • 3.15.2
        • 3.15.1
    • Release notifications
Powered by GitBook
On this page
  • Updated Analysis Summary View
  • Improvements to the Requeue Experience
  • Consolidation of New and Classic Modes
  • Automated Run Zipping
  • Archiving

Was this helpful?

Export as PDF
  1. Overview

What's New

PreviousSoftware OverviewNextFAQ

Last updated 5 months ago

Was this helpful?

Updated Analysis Summary View

The analysis summary tab has been updated to bring the most relevant information front and center, both while the analysis is running and after it completes.

Spotlight Section

Useful information such as the analysis status and cost, as well as the application and version number, is organized in a Spotlight section at the top of the page.

Multiple Output Projects

Analyses that write data to multiple output projects now show an expandable list with links to each project.

This, along with the project column in the files tab, allows you to easily find any project or file associated with an analysis.

Multi-Node Applications

For applications that run multiple nodes, the Spotlight section incorporates high-level node statuses.

Detailed information for each node is displayed below the Spotlight and Logs sections. In addition to the node status and analysis duration, a dropdown section shows real-time logs and (upon completion) any log files that were produced.

Logs and Log Files

As before, the Logs section displays real-time logging during the analysis. In addition, a separate Log Files section will appear for applications that output specific log files, such as FASTQ Generation.

The availability of these log files is also reflected by a link in the Spotlight section, under the Application Type.

Improvements to the Requeue Experience

Requeue Sample Sheet

Requeue Planned Run

Supported Requeue Applications

  • The V1 sample sheet format supports launching the FASTQ Generation app.

  • The V2 sample sheet format supports launching BCL Convert and supported Illumina DRAGEN secondary analysis applications:

    • Illumina DRAGEN Apps version 3 or higher.

    • DRAGEN TruSight Oncology 500 Apps version 2.1 or higher.

Consolidation of New and Classic Modes

To simplify workflows in BaseSpace Sequence Hub, we are consolidating New and Classic mode interfaces. With this change, Biosamples and Samples will be visible in a single view with no need to toggle between modes. Instead, choose a preferred input type when launching applications.

For more information,

Automated Run Zipping

Around the middle of 2022, we will turn on an automated process in BaseSpace Sequence Hub that will start zipping the BCL and image files associated with old runs. Any run that hasn’t been modified for more than 90 days will be eligible for zipping. Metrics, log files, samplesheets, and other files in the run folder will be left untouched, and the ability to review run metrics remains unchanged.

Archiving

BaseSpace Sequence Hub now includes archive storage. This feature allows accounts configured for New application mode to move runs and datasets to long-term storage, with significantly lower costs than standard storage.

Data transfer to and from archival storage takes several days to complete and incurs additional fees per TB transferred. Restoring data that have been archived for a short period of time can result in higher overall storage, so archiving is not recommended for data that you intend to use soon.

The requeue sample sheet feature loads the original run sample sheet into a text editor, allowing for review and/or editing before launching the requeue. Previously this feature only supported V1 sample sheets and now supports both V1 and V2 formats. For more information, see .

The requeue planned run feature uses the Run Planning tool for reviewing and/or editing V2 sample sheets. This feature supports both starting from the original sample sheet as well as uploading a new V2 sample sheet, which can be useful when the original sample sheet is the V1 format. Previously this feature was restricted to runs from certain instrument types and storage configurations and is now available for all runs. For more information, see .

For more information, see .

For more information, see .

Fix Sample Sheet
Requeue a Planned Run
Illumina Informatics New and Updates
BaseSpace Data Model Documentation
Automated Run Zipping
Archival Storage
Analysis summary spotlight section
Analysis summary with multiple projects
Analysis files tab with multiple projects
Multi-node analysis with node summary
Multi-node analysis detailed node list
Analysis log files section
Analysis summary showing log files link