# Log R deviation

The Log R Deviation (or Log R Ratio standard deviation) quantifies the variability of the the signal intensity for each SNP marker on an array, ie, noise level.

Log R deviation is one of the key metrics used to determine array sample [quality](/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/array-sample-quality-metrics/array-sample-quality.md), alongside [call rate](/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/array-sample-quality-metrics/call-rate.md).

Lower values indicate more consistent signal intensities. A high Log R Deviation can indicate a poor-quality sample or potential issues with CNV calling.

Displayed to three decimal places.


---

# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://help.connected.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/array-sample-quality-metrics/log-r-deviation.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
