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Clarity LIMS Software

Clarity LIMS Software Clarity LIMS v6.3 & Lablink v2.5 Clarity LIMS v6.2 & Lablink v2.4

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Clarity LIMS Software

Clarity LIMS Software Clarity LIMS v6.3 & Lablink v2.5 Clarity LIMS v6.2 & Lablink v2.4

Announcements
Clarity LIMS
- Clarity & LabLink
API and Database
- API Portal
Illumina Preset Protocols
Sample Prep
- QC and Sample Prep
Library Prep
iLASS & Infinium Arrays
- iLASS
  - iLASS Infinium Genotyping v1.1
    iLASS Infinium Batch DNA v1.1
    iLASS Infinium Genotyping Assay v1.1
    iLASS Infinium Genotyping with PGx Assay v1.1
  - iLASS Infinium Genotyping v1.0
    iLASS Infinium Genotyping Assay v1.0
    iLASS Infinium Genotyping with PGx Assay v1.0
- Infinium Arrays
Applications
- IGA
  - IGA v2.1
    IGA Library Prep Automated v2.1
    IGA NovaSeq Sequencing v2.1
- Viral Pathogen Protocols
Instruments & Integrations
Integration Toolkits
- Lab Instrument Toolkit
- Lab Logic Toolkit
Known Issues
- Integration
  - Sample Sheet Generation Issue and CLPA Issues When Samples Have Been Assigned QC Flag Prior to Entering Steps
Security Bulletin
- Investigation of OpenSSH vulnerability with Clarity LIMS
Resources
- Third Party Software Information
Others
- Revision History

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Prerequisites and Assumptions
Workflows, Protocols, and Steps
Library Prep Validation v2.3.1 Workflow
NovaSeq 6000 v3.8 Workflow
Protocol 1: Run Format (NovaSeq 6000 v3.8)
Step 1. Define Run Format (NovaSeq 6000 v3.8)
Protocol 2: NovaSeq Standard (NovaSeq 6000 v3.8)
Step 1: Make Bulk Pool for NovaSeq Standard (NovaSeq 6000 v3.8)
Step 2: Dilute and Denature (NovaSeq 6000 v3.8)
Protocol 3: NovaSeq Xp (NovaSeq 6000 v3.8)
Step 1: Make Bulk Pool for NovaSeq Xp (NovaSeq 6000 v3.8)
Step 2: Dilute, Denature & ExAmp (NovaSeq 6000 v3.8)
Step 3: Load to Flowcell (NovaSeq 6000 v3.8)
Protocol 4: AUTOMATED - NovaSeq Run (NovaSeq 6000 v3.8)
Step 1: AUTOMATED - NovaSeq Run (NovaSeq 6000 v3.8)
Sample Sheet Generation
NovaSeq 6000 Run
Components Installed
NovaSeq 6000 Integration RPM Components
application.yml Properties
Reagent Categories/Label Groups
Reagent Kits
Container Types
NVCS Configuration
Routing Script Requirements
Configuring autoComplete Properties
Rules and Constraints

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Instruments & Integrations

NovaSeq 6000 (API-based)

NovaSeq 6000 API-based v3.6.0

Configuration