User roles
Emedgene users are defined by roles. Roles are managed in Settings > User Management. Access to the User Management tab is restricted to those with the appropriate permission.
The available roles for Emedgene are described below:
Acmg Tags
Allows to see ACMG Tags
Analyze > Variant page
All
Acmg Tags Edit
Allows to edit ACMG classification
Analyze > Variant page
Analyst, Director, Manager
Add New Test
Allows to manually create a case or (32.0+) upload a batch of cases via .csv
Analyze > Add a new case
Analyst, Director, Manager
Apidocs
Allows to see API documentation
Analyze
IT team
Auto Analysis
Allows to see the AI Shortlist analysis results
Analyze > Variant page
All
Candidate Compound With
Allows to combine two compound variants by gene name on the candidate page
Analyze > Case page
Analyst, Director, Manager
Change Finalized Test Status
Allows to unlock a finalized case
Analyze > Case page
Director, Manager
Check Preset
Allows to implement Presets from a list
Analyze > Case page
Analyst, Director, Manager
Comment
Allows to send a comment
Analyze > Case page
Analyst, Director, Manager
Comment Delete
Allows to delete a comment
Analyze > Case page
Manager
Create Report
Allows to generate report template
Analyze > Clinical report
Director, Manager
Create Variant
Allows to create an additional variant
Analyze > Case page
Director, Manager
Developer
Allows to see developer settings (Webhook)
Analyze
IT team
Download
Allows to download files
Analyze > Case page
Analyst, Director, Manager
Due Date
Allows to edit due date
Analyze > Case page
Analyst, Director, Manager
Edit Test
Allows to edit test's info
Analyze > Case page
Analyst, Director, Manager
Evidence
Allows to see evidence page
Analyze > Variant page
All
Evidence Edit
Allows to edit evidence page
Analyze > Variant page
Analyst, Director, Manager
Evidence Generate
Allows to generate initial evidence
Analyze > Variant page
Analyst, Director, Manager
Evidence Pathogenicity Edit
Allows to edit evidence pathogenicity
Analyze > Variant page
Analyst, Director, Manager
Evidence Text Edit
Allows to edit evidence text (Variant interpretation)
Analyze > Variant page
Analyst, Director, Manager
Gene Lists Read Only
Allows to show the gene list
Analyze
All
Gnomad Genome
Allows to see GnomAD genome data annotation
Analyze > Variant page
All
KMS
Allows to access Emedgene Curate
Curate
All
KMS Create Gene
Allows user to create a new gene in KMS
Curate
Manager
KMS Create Variant
Allows to create new variant in KMS
Curate
Manager
KMS Export
Allows user to export from varpage to the KMS
Curate
All
KMS Import Network Variant
Allows user to import variants from Network to Curate
Curate
Manager
KMS Update Disease ID
Allows to update disease ID of the variant in KMS
Curate
Manager
KMS Update Gene Interpretation
Allows user to update gene interpretation in KMS
Curate
Manager
KMS Update Gene Transcript Ref Sequence
Allows user to update a gene selected transcript in KMS
Curate
Manager
KMS Update Gene Note
Allows user to update gene note in KMS
Curate
Manager
KMS Update Interpretation
Allows to update interpretation of the variant in KMS
Curate
Manager
KMS Update Note
Allows to update variant note in KMS
Curate
Manager
KMS Update Pathogenicity
Allows to update pathogenicity of the variant in KMS
Curate
Manager
KMS Update Transcript
Allows to update transcript of the variant in KMS
Curate
Manager
Load Bam IGV
Allows to synchronize external IGV viewer with the platform
Analyze > Case page
All
Manage Case Default Page (34.0+)
Allows to set a default page upon entering a case
Analyze > Settings
Manager
Manage Case Identifier (33.0+)
Allows to set a custom case identifier
Analyze > Settings
Manager
Manage Column Order (34.0+)
Allows to customize the default order of Variant table columns.
Analyze > Settings
Manager
Manager Edit Variant Tags
Allows user to manage variant tags
Analyze > Settings
Director, Manager
Manage Gene List
Allows to create, edit gene lists
Analyze > Settings
Manager
Manage Gene List Visibility
Allows to manage gene list visibility
Analyze > Settings
Manager
Manage Kit Bed (30.0+)
Allows user to manage kits and bed uploads
Analyze > Settings
Manager
Manage Labels
Allows to manage labels
Analyze > Settings
Manager
Manage Platform Version (33.0+)
Allows to set a platform version
Analyze > Settings
Manager
Manage S3 Credentials (32.0+)
Allows to create access key and secret key; deactivate, activate and delete access key.
Analyze > Settings
Manager
Manager Support Access (31.0+)
Enable/disable support access to the organization
Analyze > Settings
Manager
Manage Test Presets
Allows to create Presets from gene lists, filter
Analyze > Settings
Analyst, Director, Manager
Manage URL Pattern (33.0+)
Allows to set a platform version
Analyze > Settings
Manager
Manager
Organizational admin (manager) role
Analyze
Manager
Multiple Storage
Allows to change the organization URL pattern
Analyze > Settings
Manager
Network
Allows to see available networks, request to join networks, leave networks, approve or reject invitations to join networks, edit existing networks of organization
Analyze > Settings
Manager
Network Create
Allows to create a new network
Analyze > Settings
Manager
Network Manage (32.0+)
Allows to create a network and define its sharing policy; leave networks
Analyze > Settings
Manager
Phenomatcher
Allows to filter by phenotypic match
Analyze > Case page
All
Preset Create (34.0+)
Allows to create Presets from active filters
Analyze > Case page;
Analyze > Settings
Analyst, Director, Manager
Preset Group Create (34.0+)
Allows to create and edit Preset groups
Analyze > Settings
Analyst, Director, Manager
Preset Group Default (34.0+)
Allows to set a default Preset group
Analyze > Settings
Manager
Preset Group Download (34.0+)
Allows to download a legacy (V1) Preset group JSON file
Analyze > Settings
Manager
Preset Group Hide (34.0+)
Allows to hide a Preset group from the Preset groups list offered at case creation
Analyze > Settings
Analyst, Director, Manager
Preset Group Revert (34.0+)
Allows to revert migration of a legacy Preset group
Analyze > Settings
Manager
Preset Delete (34.0+)
Allows to delete a non-locked Preset
Analyze > Settings
Analyst, Director, Manager
Preset Lock (34.0+)
Allows to lock and unlock editing the Preset
Analyze > Settings
Manager
Preset Manage (34.0+)
Allows to view and edit a Preset in JSON format
Analyze > Settings
Manager
Re Upload Tab
Allows to re-upload files
Analyze > Case page
Analyst, Director, Manager
Render Template
Allows to create a variant interpretation paragraph on the fly
Analyze > Clinical report
Analyst, Director, Manager
Report
Allows to export a report as a PDF
Analyze > Clinical report
Director, Manager
Report Preview
Allows to preview report
Analyze > Clinical report
All
Sanger Edit
Allows to edit Sanger sequencing information
Analyze > Variant page
Analyst, Director, Manager
Storage Provider
Allows to manage storage providers
Analyze > Settings
Manager, IT team
Tag Variant
Allows to tag a variant
Analyze > Variant page
Analyst, Director, Manager
Test Status
Allows to change test status
Analyze > Case page
Analyst, Director, Manager
Test Status Move to Trash
Allows to assign a Move to trash Case status
Analyze > Case page
Manager
Test Status to Finalized
Allows to change case status to finalized
Analyze > Case page
Director, Manager
Transcript Edit
Allows to change the default transcript for variants
Analyze > Variant page
Analyst, Director, Manager
Unknown Phenomatch
Allows to use Unknown Phenomatch variant filter
Analyze > Case page
All
Upload
Allows to upload files to be associated to a case
Analyze > Add a new case
Analyst, Director, Manager
User
Regular user role
Analyze
All
User Management
Allows to manage users
Analyze > Settings
Manager
User Read (30.0+)
Allows users access to organization data
Analyze
All
User Rerun Case
Allows to rerun cases
Analyze > Edit case info
Analyst, Director, Manager
Versions Tab
Allows seeing the versions tab
Analyze > Case page
All
If you are not seeing part of the roles from the user management interface, please be in touch with our support.
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